Tyan040015.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- MBD2
- Assembly
- GCA_030247195.1
- Location
- CM058069.1:427120638-427122500[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-24 6.3e-20 72.6 0.0 1 73 5 72 5 76 0.91 2 2 0.0003 4.6 8.9 0.0 29 74 136 191 121 194 0.88
Sequence Information
- Coding Sequence
- ATGAATGTTTCCATCGAAAAGAAACGAGCGGACTGTGCGGCACTGCCGAAAGGATGGCAACGAGAGGAAGTTCTCCGGAAAACTGGACTATCCGCTGGCAAAGTAGACGTATACTATTATAGTCCAACGGGTAAAAAGATCGAAAGTAAACCGCAACTAGCCCGAGCACTCGGGGACACTATCGACCTGTCTACGTTTGATTATCAAGCCGGTCGGATCGTACCGAATGCAACGCATATGATGTTGCAGCACAATGCACTCAAAAGGAAATTAGGTGGTCCAGTGGCAGCAGGTGCTCCCCTAGTTCCAAGTCCAACGCTACCGCCACCTGTTCCGATTTATCATCAGTTTTCCAGTGGCGCAGGTGGAAGACAGCCGCACCAGCAGTATGAATACAGTCGAGGAATGCGGGCGGATACTTCCTTAATCCCACCGATTCGGCAGACAGCGTCCATTTTCAAGCAGCCAGTAACAGTCGTCCGGTCTCAGGACAGTGATAGCAAAGTTAAGCGGGAGCTACAACATGGCTCCCAGATCAAACCGAAGCAACTGTTTTGGGAGAAACGGCTGGAGAATCTCCGTGCCAACAACACGTTCAACGAAGAGATCGGTTCCCTGGAGCTTCCCAAGCGCCTCAAAGCTGTTGGTCCTGGGGTAAATGAAGCCACAGTGCTACAATCGCTAGCCACAGCACTGCATCACAATACCCATCCTGTAACTGGACAAACCGCTTCCAAGACTTCATTGAACACAAACGCCGGAGTTTTTCTCAATCCGGATCAGCCACTGATGCATGTAACCACCGTCACTGAGGATGATATTAAACGACAAGAGGAGCGAGTTCAGTTCGCCCGTTCCCGACTGCAAGAGGCTTTGCGGGCGTAA
- Protein Sequence
- MNVSIEKKRADCAALPKGWQREEVLRKTGLSAGKVDVYYYSPTGKKIESKPQLARALGDTIDLSTFDYQAGRIVPNATHMMLQHNALKRKLGGPVAAGAPLVPSPTLPPPVPIYHQFSSGAGGRQPHQQYEYSRGMRADTSLIPPIRQTASIFKQPVTVVRSQDSDSKVKRELQHGSQIKPKQLFWEKRLENLRANNTFNEEIGSLELPKRLKAVGPGVNEATVLQSLATALHHNTHPVTGQTASKTSLNTNAGVFLNPDQPLMHVTTVTEDDIKRQEERVQFARSRLQEALRA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948753;
- 90% Identity
- iTF_00948753;
- 80% Identity
- -