Basic Information

Insect: Tolmerus cingulatus
Gene Symbol: -
Assembly: GCA_959613345.1
Location: OY390710.1:36555391-36557445[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0002 1.3 10.5 0.3 22 44 264 286 259 294 0.87

2 4 0.14 9.8e+02 1.4 0.0 21 44 291 314 288 318 0.86

3 4 3.5e-05 0.24 12.9 0.0 21 44 319 342 308 352 0.83

4 4 0.19 1.3e+03 1.0 0.0 21 45 347 371 342 379 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0002	1.3	10.5	0.3	22	44	264	286	259	294	0.87
2	4	0.14	9.8e+02	1.4	0.0	21	44	291	314	288	318	0.86
3	4	3.5e-05	0.24	12.9	0.0	21	44	319	342	308	352	0.83
4	4	0.19	1.3e+03	1.0	0.0	21	45	347	371	342	379	0.80

Sequence Information

Coding Sequence: ATGTCGGGTGATTTAAGCTCCGAAGTAAAAATAGAAAGTATATGTCGAACCTGCCTGGAGGAAGCCGAGGATCTTCGATCCATTTTCAACGAGGGGAAGGTCTGTGGCGAAGTCACAACTTTGTCTCAAATGTTGGCTAAGTGCACATCGCTTGACcCAAAGCAGGGCGACGAGCTACCATCAGTTGTCTGCGCAAAATGTATGTTGCAAATTTGTAGGTCTTATGTATTtcggaaaaaatgtttaaattccgACACAACCCTTAGAAAGAATTTGCATTCGAAATTCAACGAAGACGAAGTTTATAGaactatatacttttatgaAGACAATGCAGAACAGCAAAACTCCGTAGAAGAGCAAACAGAAGAAGCGAATAGTTATGAAGAGGAAgtaaatttagtaattaagAATGATGATACAGTAGAGGTAATTGAAAATGTCCAAAACGAAGAAgtaaatgattttgaaaatgttatggAAGAAGGAAGTAATGCTGCGAAAAGTGTTGAATATGATACAAGCAATATTACCTCCGAGGAAAAATCAGACACTGACGTCATGACGAACCCTCCGAAAGTTGTGTTTCGAAAACGGAGGCAGAGAACTAAAAAACTTCCAGGACCCCCATTTAAATGCGAGGAATGCGGGAAGGTATTAAGTAACCATAGCTCTTATAAATATCACATGCAACTGCATTCGGACAACACGCCTTATTTATGCAGCGAGTGCGGAGAAGGATTTAAGACTCGCAATGCGTACGATGGGCATATGACGAcgcataataaaaataatcctcATACTTGCAAAATATGCGGGAAAGCGTATCGGCAGGCCGGATCACTGCGTTGCCACATGCTTTCGCACACGGGAGAAAAGCCCTTCCTTTGCGGAATATGCGGAAAGGGGATGACACAAAAATCTGGATTTAAGaaacacATGTTGACGCATACGGGGGAAAAGCCGCACACATGCgatatttgctttaaaaaatttcgatattcgagcaatttaataattcataagCGGGCGCACACTGGAGAGAAACCCTACGTTTGCacgGTTTGTGACAAACGTTTCGTAGGTGGAGAGCAACTCAAAAGACACGCAATAGTTCATACTCAGGAGAAACCATTTGAATGTGACGACTGTGGGAAATTTTTCAACCGTAGAAGTTCACTAATTGTTCACAGATATCTACACACCGGGAATAAAAAACATTCATGCCTGATATGCGGAAAAGCgtatattcaatttcattgCCTTCACAACCACATGATGACTCATAAAAACATAGAGAATAAGGACTTGAACCCGCAAGAAATTGAAAGCATGCACTAA
Protein Sequence: MSGDLSSEVKIESICRTCLEEAEDLRSIFNEGKVCGEVTTLSQMLAKCTSLDPKQGDELPSVVCAKCMLQICRSYVFRKKCLNSDTTLRKNLHSKFNEDEVYRTIYFYEDNAEQQNSVEEQTEEANSYEEEVNLVIKNDDTVEVIENVQNEEVNDFENVMEEGSNAAKSVEYDTSNITSEEKSDTDVMTNPPKVVFRKRRQRTKKLPGPPFKCEECGKVLSNHSSYKYHMQLHSDNTPYLCSECGEGFKTRNAYDGHMTTHNKNNPHTCKICGKAYRQAGSLRCHMLSHTGEKPFLCGICGKGMTQKSGFKKHMLTHTGEKPHTCDICFKKFRYSSNLIIHKRAHTGEKPYVCTVCDKRFVGGEQLKRHAIVHTQEKPFECDDCGKFFNRRSSLIVHRYLHTGNKKHSCLICGKAYIQFHCLHNHMMTHKNIENKDLNPQEIESMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01184037;
90% Identity: iTF_00718007;
80% Identity: iTF_01461374;