Tcin018115.1
Basic Information
- Insect
- Tolmerus cingulatus
- Gene Symbol
- -
- Assembly
- GCA_959613345.1
- Location
- OY390708.1:16199646-16204557[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.6 3.1e+02 3.5 0.4 2 19 193 210 192 212 0.90 2 17 0.15 30 6.7 0.4 2 12 258 268 257 275 0.82 3 17 0.0002 0.04 15.7 0.1 3 23 319 340 318 340 0.95 4 17 9.5e-05 0.019 16.8 0.3 1 23 346 368 346 368 0.96 5 17 0.0084 1.6 10.7 0.8 1 23 374 397 374 397 0.96 6 17 0.00026 0.052 15.4 3.4 1 23 402 424 402 424 0.98 7 17 0.011 2.1 10.3 1.3 1 23 472 494 472 494 0.96 8 17 0.0061 1.2 11.1 1.9 1 23 499 521 499 521 0.97 9 17 0.15 29 6.7 2.0 1 23 537 562 537 562 0.96 10 17 0.00022 0.043 15.6 1.0 1 23 568 591 568 591 0.93 11 17 0.0012 0.24 13.3 0.4 1 23 596 619 596 619 0.97 12 17 0.00022 0.042 15.7 0.5 1 23 624 647 624 647 0.97 13 17 6.2e-05 0.012 17.4 0.6 1 23 650 673 650 673 0.97 14 17 1.1 2.1e+02 4.0 4.0 1 23 679 702 679 702 0.89 15 17 0.012 2.3 10.2 0.3 1 23 708 730 708 730 0.98 16 17 1.2e-07 2.4e-05 25.9 1.8 1 23 736 758 736 758 0.99 17 17 0.0021 0.41 12.6 0.1 1 23 764 789 764 789 0.97
Sequence Information
- Coding Sequence
- atgccaccACCGAAAAAGCGCGGTCGTCCTCCAAATCCACAACTGACAAAGTGCCTTAGTTGCGCCGTCGACATGAAGCAGCCCTATCAACTCATTTTCGATGAAAGCGGTGTTGAACTAGAGCTGCAAAATTTGCTTTCCACTTGCTTTGGGATGCGCGTTGTGGAGGACAAAAAGCAAATTCAAGCTCTGTGTGAGGATTGTCTTAATCGACTAATTGATGTTTTCGACGTTATGCAGACGAAAACACAGGAAGAGCCCGGCCCGTCTTCAACAACCGCAGAgcttccaaaaataaaacacgaatttgaaaattttgagcTCGAAAATGAAAGCATTTATGAGGTCATTGATGAGGCGGATATAATTACTGTTAAAGATTCAGATCTAACTGAGATTGAGGAAGAAACGCAAGCAGTAACTAACAATCCCAGTGAGGATCTTAATGAAAATGaTCTTGGAGGATTCGAAAGTATTGATTACTTAGAAGATTTCGACGAAGAAATCGATATTCGGGAATATAAAATCGGAATCCTACAAAATACACTTTTATGCTTATTACTTCCTGAAAGTGTCCAGTGTCGGTTATGTTCTGAAAGTTTCGAGAAACACGCTGATGTGGTAAATCACGCCGAATGCACACACTGCGTCGAGGACTTTGCTTATCCTTGTATAATTGACGAAAATTGTGAACCACAAAAATCTGTGATGGATCTTTCGTTGCACTTGGTTTTCAAGCATTACGACCTGGAAAAATTACAGATCTATACTCAATGCCCTGAATGTGATAGAAGATTCGACAATTTTTTGCTTCACAACAAGCATTCATGCTATGTTGGTGAAAAAATTTCCCGAAGTGCAACTGATTGTGCAAATTGTTGTAAATCGTTTAAATCAAATAAGAGATATCGCTTCCaccaaaattttcatcaaGAAAAAAGACGTCCCAAAGCCTGTCTTATCTGCGACAAATCGTTTAGAGATGAAGATGAATTTTACGAGCATATTATGTATCAGCATGTGAAAAACCTTGGGTTCGTTTGTTTAAGttGCGACATGTCGTTCactaatgaagaaaatttaaaaaatcatgaaAGTATACATAAAATTGAGCGGCAGTACAATTGCAAGCTATGTAGCAAGTCTTACCTCTATAATCAGCTTTTAAAGGATCATATGatATCAGCTCATGGAAAAAATCCTTTCAAATGTCATATTTGTAACAAATACTTGATTAAGAAAACGCTTTTGAACAAACACATTTTATCGCACTCTGTGCCCCAAGCAGCTGAAATTCTGAGTTGCAGTTGTTGCGGcctaatttttgataaatcaGAGGAATCTGAGAACCACACGACCAAACACAATGAAAGCGATGAAGCAAGCATTGTAAccgaagaaattgaaattgcatATTGCTGTGAGTATTGCGAGCTTGCTTTTAATTCTATTACGAATATGTTCGCCCACCGAGAACTTCACGATaaacagaaatatttctgTGATTTATGTCCTCTGAGCTACAccgaatataaaaaattgaaaacgcaTAAATTGACTCATTTCAATTATGTGGACAAAAGATATACATTCCCAGTTACTAGACACTATGTTTGCGATTTTCCGGACTGCACCATGAGTTATTTGCAGTGGACCAGTCTTCGATCACATAAGAGGCACAAACATTGTTATCAGAAAAGTTTTCATTGTCCCAAATGTCCTGAAGAATTCACGGATGTgaaacaatttaaaacacaCATGGAAGATGTCCACAACAGCACTGCTTTTAAATgccaattttgcaataaagaTTACGGCAACAAAATGGCTTTGGCGGTTCATATTGCCCGGCGTCATAACGcaaGTCGTTTTCAGTGCGATTTGTGTGAGCAAAGCTATTCGACGAAGGCGGTTTTGGAAAGGCATAAGACAACTGTTCACAGCAGTTTCCCATGCTCGATTTGcggaaaagttttaaaaaattttaagaattttcagGTCCATAATCGAATGGTTCACGAAAAGGAGAAAAGGTTCTTCTGCAAGTATTGCAACAAGGGCTACTTCAATAACTGCGATAAAATGGAACACGAATCATCGGTACacgaaaaagttaaaaaatacgTTTGTGATTTATGTCCTTATTCAGCGGTGTATAAGGAATGCCTAATTGTTCACAAAAGAGCGCACCGAAATGAAACGCCTTTCAAATGCGAGCTCTGCAACAAAGCCTTCCGGCGAAATTACGCCCTACGCGTTCATATGAAGCGACATTACAACATCAAAGATTTTCCTTGTCCCTACGAGGACTGTGGGGCCTCCTATGAGAACCAGGGAATTTTAAACAACCACATTAAAACGAAGCATGGACGGAAGCGATTAACTGGGGATAGTTATCATCGTAACCGATATGGAGAATCAGCCGATTTTTTTGttgacgacgacgacggttTGGACGATGGTGTTATTGGGGATCCGAGCATTCAAGCGTCCAAAGAAGATGAAGATGATATAGTTCCCAATGATAATATTAACTATATTGAAAAACATGTCGACTCTGATTTAGGGGATATTGAGCAAAGAAATGAATCAGATAACAATTACATTGTGGAAGAAGTATTCGAAGTTGTAATGCaagatatctaa
- Protein Sequence
- MPPPKKRGRPPNPQLTKCLSCAVDMKQPYQLIFDESGVELELQNLLSTCFGMRVVEDKKQIQALCEDCLNRLIDVFDVMQTKTQEEPGPSSTTAELPKIKHEFENFELENESIYEVIDEADIITVKDSDLTEIEEETQAVTNNPSEDLNENDLGGFESIDYLEDFDEEIDIREYKIGILQNTLLCLLLPESVQCRLCSESFEKHADVVNHAECTHCVEDFAYPCIIDENCEPQKSVMDLSLHLVFKHYDLEKLQIYTQCPECDRRFDNFLLHNKHSCYVGEKISRSATDCANCCKSFKSNKRYRFHQNFHQEKRRPKACLICDKSFRDEDEFYEHIMYQHVKNLGFVCLSCDMSFTNEENLKNHESIHKIERQYNCKLCSKSYLYNQLLKDHMISAHGKNPFKCHICNKYLIKKTLLNKHILSHSVPQAAEILSCSCCGLIFDKSEESENHTTKHNESDEASIVTEEIEIAYCCEYCELAFNSITNMFAHRELHDKQKYFCDLCPLSYTEYKKLKTHKLTHFNYVDKRYTFPVTRHYVCDFPDCTMSYLQWTSLRSHKRHKHCYQKSFHCPKCPEEFTDVKQFKTHMEDVHNSTAFKCQFCNKDYGNKMALAVHIARRHNASRFQCDLCEQSYSTKAVLERHKTTVHSSFPCSICGKVLKNFKNFQVHNRMVHEKEKRFFCKYCNKGYFNNCDKMEHESSVHEKVKKYVCDLCPYSAVYKECLIVHKRAHRNETPFKCELCNKAFRRNYALRVHMKRHYNIKDFPCPYEDCGASYENQGILNNHIKTKHGRKRLTGDSYHRNRYGESADFFVDDDDGLDDGVIGDPSIQASKEDEDDIVPNDNINYIEKHVDSDLGDIEQRNESDNNYIVEEVFEVVMQDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00937497;
- 90% Identity
- -
- 80% Identity
- -