Tver128907.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282560.1:46696007-46705791[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00023 15 9.1 0.1 21 43 38 60 30 67 0.87 2 8 0.012 7.5e+02 3.7 0.4 23 45 68 90 64 97 0.85 3 8 0.0067 4.4e+02 4.4 0.4 24 43 97 116 92 124 0.87 4 8 0.0022 1.5e+02 6.0 0.9 23 47 124 148 117 153 0.84 5 8 0.0059 3.9e+02 4.6 1.0 23 47 152 176 148 181 0.86 6 8 0.012 7.6e+02 3.7 0.6 23 44 180 201 176 205 0.86 7 8 0.003 2e+02 5.5 0.0 21 43 206 228 202 235 0.88 8 8 9e-06 0.59 13.6 0.2 23 44 236 257 232 262 0.90
Sequence Information
- Coding Sequence
- ATGCTGGCCCATCGCGAACGACATATTATTGAATCAACATTTTCGTGTGGCGTATGCCCCAAGAAATTTACAAGCCATAGCAGTTTATGGAAACATATAAAATCACATACGGGCGAACGACCGTTTATTTGTGAGATATGCCATAAAGGATTCACGCAGCTGGCCAATTTACAGCGTCATCATTTTGTTCATAATGGTTTACGGCCGTACGAATGTCCAGTGTGCCAGAAACGATTCTCCCAACATGCCAATATGATTAAACATCAATTACTTCATACaggtCTAAGACCATTCGAATGCCCTATTTGTCAAAAACGATTCACACAACATGCCAATATGATAAAACATCAAAGATCACATACAGGACTCAGACCATACGAATGTCCAATATGTCAGAAACGCTTTACACAGCATGCCAACATGATTAAACATCAGAGATTACATACaggcCAAAGACCATATGAATGTCCTGTGTGTCAAAAACGGTTTACACAACATGCAAATATGATAAAGCATCAACGGTTGCACACAGGTCAAAGGCCGTATGAATGTCCTGTGTGTCAAAAACGTTTTACTCAACATGCGAATATGATAAAACATCAGCGAGTGCACACAGGCGAAAAGCCATTCAAATGCAAAGTCTGTGATAAATCATTTGCTCAgagagcaaatttaaaaaaacatgaaatggTTCATACAGGTGTGCGGCCCCATAGTTGTTCAATATGTTTTAGGACATATGCACAATCGGCAAATCTAAAAAAACATTTGCTCGTACACGAAAAAGAACAGAAACAAGCACGAGATTTTGTATTGACAAATTCTTGTACACAATGCCATAATGTAACTGATAAGACAGCATACGATGAACATTTACGAACGTCCCATATACCAATGGGATTAACCGCCATAAATTATTGTAGTCCAATAGCACATCCAATCCAGCATAATCCTCACGGTCCCCCGCCCCCGCCTCCTCCCCATTTAGCACCCGTATTACAACATCCCGGCTTAACGCCATTAAATAATAGTAGTggtattaaattagaaaaaccgGCCGAAGTGAAAAAAGAGCGCCCCGAACAGGAAGGACCGGAAGAATCTAATTTATCAAATGGTGATATTTCCGAGAATTATTCCAGAGTAAAGGTGTGA
- Protein Sequence
- MLAHRERHIIESTFSCGVCPKKFTSHSSLWKHIKSHTGERPFICEICHKGFTQLANLQRHHFVHNGLRPYECPVCQKRFSQHANMIKHQLLHTGLRPFECPICQKRFTQHANMIKHQRSHTGLRPYECPICQKRFTQHANMIKHQRLHTGQRPYECPVCQKRFTQHANMIKHQRLHTGQRPYECPVCQKRFTQHANMIKHQRVHTGEKPFKCKVCDKSFAQRANLKKHEMVHTGVRPHSCSICFRTYAQSANLKKHLLVHEKEQKQARDFVLTNSCTQCHNVTDKTAYDEHLRTSHIPMGLTAINYCSPIAHPIQHNPHGPPPPPPPHLAPVLQHPGLTPLNNSSGIKLEKPAEVKKERPEQEGPEESNLSNGDISENYSRVKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01460483;
- 90% Identity
- iTF_01460483;
- 80% Identity
- iTF_01460483;