Basic Information

Insect: Tipula vernalis
Gene Symbol: Trl
Assembly: GCA_958295665.1
Location: OY282559.1:395532489-395535042[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3 2e+05 -4.4 0.6 13 19 198 204 194 206 0.71

2 3 0.47 3e+04 -1.5 0.0 3 40 209 245 207 249 0.70

3 3 8.4e-21 5.5e-16 61.8 1.1 14 51 250 287 239 289 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3	2e+05	-4.4	0.6	13	19	198	204	194	206	0.71
2	3	0.47	3e+04	-1.5	0.0	3	40	209	245	207	249	0.70
3	3	8.4e-21	5.5e-16	61.8	1.1	14	51	250	287	239	289	0.93

Sequence Information

Coding Sequence: ATGTCGATAAATTCGCTGTACAGTTTGACGTGGGGCGATTACGGGACGTCGCTGGTCTCGGCGGTCCAATTGCTACGGTGCCATGGTGATCTAGTTGATTGTACACTAGCAGCCGGAGGACGTAGTTTTCCAGCCCATAAAATTGTCCTATGTGCTGCTAGTCCATTTCTATTAGATTTGTTGAagAATACGCCATGCAAACATCCAGTTGTCATGTTGGCGGGTGTTAATGCAAACGATCTCGAAGCATTATTGGAATTTGTATATCGTGGTGAAGTTAGCGTAGATCATTCACAATTGCCGTCATTATTGCAAGCGGCCCACTGTTTAAATATACAAGGGCTTGCCCCTCAGACCGTCACCACCCATAAGGATGAATACACAACATCGATACAGCTTCATCCGACCTTAATACCACAGCATCATGTCAAAGCCGTAATAGATGTTGGCAATAATACAGTTaGCGAGGAATTAATTACAATACAAACAGCACCCAATACAATTCAAGCACAAATTGTCGAAGCCCCCGAAGAAATACAAGAGGAACAAGCTGAATTAAAGGATATTAGTCATTATTTGCCACAACGAAAACGGAAGCCACGCGCAAGAAAGAATCAGAATGGAGCCAAAATGGTAAAAACAGAGGAAGGCGCTGAAGaagttcaacaacaacaacaagaagtTCAACAAACTACAACCGAAAATCAAATCATaatcaaacaagaaaaaaatatcgatgtaccAATCAAAATAAAATCCAAATCTATATCCGAACAACCAGCTGCATGTCCAATTTGTAATTCAGTCTTAAGACAATCCCGAAATTTAAAACGtcatttagaattaaaacattTCTCCCGTGTTAATGGTAAAAAACGATTGAAAAcgGAGGGAAATCATGTTGTCGTCACATCAGCCGCATCTCAAGAAACACCTTCAACTTCACAAACAGGAACGGTTGCTGTATCCATGGCTAATTCACAAATCGATCAAAATAATATTCAGGATCATGAACAGCAACCGACTCATGTTGTAACACAGCAAGAGAATACGGATGGTACAACATCATTATCGATTGCACAAGTAATGCCCGGTCATCAAATAACACTTGGAAATTTAAATCAGGTTCATGTAATCATCGCCGTGTATCCGTCACCGTTATCAATGAAAGTGAATCGCTTTTTCATCTGGTTCGCAGAGATTTTAATTTCTCGTTTGTCCATTGGTGTTTCGGTTAGCACAAAATAG
Protein Sequence: MSINSLYSLTWGDYGTSLVSAVQLLRCHGDLVDCTLAAGGRSFPAHKIVLCAASPFLLDLLKNTPCKHPVVMLAGVNANDLEALLEFVYRGEVSVDHSQLPSLLQAAHCLNIQGLAPQTVTTHKDEYTTSIQLHPTLIPQHHVKAVIDVGNNTVSEELITIQTAPNTIQAQIVEAPEEIQEEQAELKDISHYLPQRKRKPRARKNQNGAKMVKTEEGAEEVQQQQQEVQQTTTENQIIIKQEKNIDVPIKIKSKSISEQPAACPICNSVLRQSRNLKRHLELKHFSRVNGKKRLKTEGNHVVVTSAASQETPSTSQTGTVAVSMANSQIDQNNIQDHEQQPTHVVTQQENTDGTTSLSIAQVMPGHQITLGNLNQVHVIIAVYPSPLSMKVNRFFIWFAEILISRLSIGVSVSTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01456151;
90% Identity: iTF_01457501;
80% Identity: iTF_01460059;