Tver062867.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:7403544-7405783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.12 67 7.5 0.2 2 23 253 274 252 274 0.96 2 9 0.092 51 7.9 0.1 1 21 346 366 346 367 0.90 3 9 2.8 1.5e+03 3.2 0.5 1 23 481 506 481 506 0.94 4 9 0.00011 0.063 17.0 1.2 2 22 513 533 513 533 0.94 5 9 2.2e-05 0.012 19.3 0.6 1 23 540 562 540 562 0.98 6 9 1.7e-06 0.00092 22.8 0.8 1 23 568 590 568 590 0.98 7 9 4.5e-06 0.0025 21.4 0.5 1 23 596 618 596 618 0.98 8 9 0.0016 0.91 13.4 0.2 1 23 624 646 624 646 0.96 9 9 2.2e-06 0.0012 22.4 2.1 1 23 652 674 652 674 0.98
Sequence Information
- Coding Sequence
- ATGTTAGAAGAAAATGAATATGAATTAGAAATAAGCTCCGACGAAATATGTCGATCGTGTCttaatcaagaaaaaaatttaaaaagtctatTCTGTAGCGAAATTTTGGATGGACAAATTGTgtcatttccaaaaatttttcaagatGTTACCGATCtgaagatagcAAAGAATGATAAGCTTCCGTCAcgaatttgtcaaaattgtaaattaaaaataaatgaattctaCATATTCAAAGAGAAATGTCGACGATCGCATGAACTGGCACTATCCATATTTTGTAAAGTTGAACCCGCTGAAATATGGTCACTTGAATCGGGAAATCCTACAAAAGATCATGATGAGACTAGCAGCAGTGACACGGCTACAGAAACGAATAATATTGATTCTAATGTAACAGTTAGTGCagaagttccatcacaattgctAGACGAAGATTCAtctgtaaatattgtaaaaaatgaagCCCTAGCATCGTTGAACGATGAAGGTTGTAATGTATCTGTTATTGATGTTGCCAATATTAAATCAGAACCAAACATAGTCGTAGATGTTACCAATGTGGATTACATCGAGGATGAGCAAGCGGAAGAGGAGGCAATTGAAAGTGGTGATACCGAGGGTGATTTCGATGAATTAAAAAACACAACCGAATATTTAGAGGAACAGGAGTTTGGGGTGGTCGAATTGatcgacgatgatgatgatgatgatgataatgtttCCTTTACACCACCGGAATTAGGTGAAATATCCTGCGAAATATGTAAAATcgaattcttaaataaattggaattcatTGATCATATAAAAAGTCACGATTTAACCGATGGCATCACTCATATCGAATCTAATACATCTCGTGAGAAATATAAAAAGGAGCCGAGACAACGTAAAAGTGGGAAATATGGTGACTATTGTAAATTTtgcaaaagttttgtaaaactCAAATCAAAAGATAacgatttatataaaaaacatatcGATTTGCATcgacaaacttttaaaattattttagaaacgaTTGATTTGTACAAATGTGGCActtgcaatttagttttcatcgATAAAATTATCTTTAAGGAGCATATTAACTCACCCGAATACTACTGTAAGGAAACTATTACGGCCGATGTAGATGTATATGATTCTGAATCTAGATGTattgaaatggatttttttgaaaacgattTCGAACCCCAAAAtcctattaaaataattaactgtaCCAAAATCAACGATAATGGTTTGTTAGAATGTAAATCATGTTCTGAGTTTCAAACATCAGAGATTGATACGCTAGTAGAACACACTGAAAAGGATCACAATGATAATTTAGATTTGTACAATAatggtttaaatatttgtaatatctGTAGCAAATGGTCGGCTTCATTGGTAGAAATACTGATGCATATCTATTTCCATGCCAGTACATATAATTgcccatttttaaattgtgccATGCTTTATAATTCGTTCGGAAAATTAAATACACATTTGGAGCGAACACATTTATTCCTGAATACGCCAACGTGCAGTCATTgtgacgaaaaatttaaaacgtacgATGATTTAACAATTCACCTGAAGCGCTTTTGTGAAAAGCGAATTTTCAAATGTGATGATTgtggtaaaacatttttatccaATTCAAGTTTGGGAGTTCATAAACGTATacacaatcaaaatataatgtatGTGTGCCAATTTTGCGGAAAAAAGTTCACACAAAGTGGTGATATGAAAATTCATGTACGAATGCATACGGGTGAGAAACCTTATCAGTGCCCGTTGTGTCCAAAACAATTCCGAACTTCTGGCAATCGACAGGATCACATGGAATCGCACAatgattccaaaaatttttttTGTGAAATATGCCTAAAATCTTTCAAAGGTGAACGAGTATTGAAGGCTCATATGGTTATTCATTCGGGTGAAAAGAAGTTTATTTGCCCGATTTGTGGTAAgcaattttatagaaaacagCACGTAAAAAGTCATTTGCGTGTGCATGACAGGCGACCAAATAAACACAAGGTCATGGATTGGTTAGACGACGATGGTGGTTCACAATCGAATGCTGATACTAAGCTTGAGAAATAA
- Protein Sequence
- MLEENEYELEISSDEICRSCLNQEKNLKSLFCSEILDGQIVSFPKIFQDVTDLKIAKNDKLPSRICQNCKLKINEFYIFKEKCRRSHELALSIFCKVEPAEIWSLESGNPTKDHDETSSSDTATETNNIDSNVTVSAEVPSQLLDEDSSVNIVKNEALASLNDEGCNVSVIDVANIKSEPNIVVDVTNVDYIEDEQAEEEAIESGDTEGDFDELKNTTEYLEEQEFGVVELIDDDDDDDDNVSFTPPELGEISCEICKIEFLNKLEFIDHIKSHDLTDGITHIESNTSREKYKKEPRQRKSGKYGDYCKFCKSFVKLKSKDNDLYKKHIDLHRQTFKIILETIDLYKCGTCNLVFIDKIIFKEHINSPEYYCKETITADVDVYDSESRCIEMDFFENDFEPQNPIKIINCTKINDNGLLECKSCSEFQTSEIDTLVEHTEKDHNDNLDLYNNGLNICNICSKWSASLVEILMHIYFHASTYNCPFLNCAMLYNSFGKLNTHLERTHLFLNTPTCSHCDEKFKTYDDLTIHLKRFCEKRIFKCDDCGKTFLSNSSLGVHKRIHNQNIMYVCQFCGKKFTQSGDMKIHVRMHTGEKPYQCPLCPKQFRTSGNRQDHMESHNDSKNFFCEICLKSFKGERVLKAHMVIHSGEKKFICPICGKQFYRKQHVKSHLRVHDRRPNKHKVMDWLDDDGGSQSNADTKLEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458929;
- 90% Identity
- iTF_01456783;
- 80% Identity
- -