Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282559.1:157624414-157626356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.017 9.3 10.2 0.3 2 23 211 232 210 232 0.95

2 13 9.8 5.4e+03 1.5 4.0 1 23 238 264 238 264 0.82

3 13 3.3e-05 0.018 18.7 6.2 2 23 271 292 270 292 0.98

4 13 0.0016 0.91 13.4 7.8 1 23 298 320 298 320 0.98

5 13 1.5e-06 0.00081 23.0 0.8 1 23 326 348 326 348 0.99

6 13 1e-05 0.0055 20.4 1.7 1 23 354 376 354 376 0.98

7 13 0.01 5.6 10.9 2.5 1 23 382 405 382 405 0.95

8 13 0.065 36 8.4 4.2 3 23 430 450 429 450 0.98

9 13 0.00017 0.093 16.5 0.4 1 23 454 477 454 477 0.97

10 13 0.0099 5.5 10.9 2.0 1 23 483 506 483 506 0.96

11 13 2.7e-06 0.0015 22.2 1.1 1 23 513 535 513 535 0.98

12 13 0.00013 0.071 16.9 3.3 1 21 541 561 541 563 0.95

13 13 0.0031 1.7 12.5 0.2 1 23 569 591 569 591 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.017	9.3	10.2	0.3	2	23	211	232	210	232	0.95
2	13	9.8	5.4e+03	1.5	4.0	1	23	238	264	238	264	0.82
3	13	3.3e-05	0.018	18.7	6.2	2	23	271	292	270	292	0.98
4	13	0.0016	0.91	13.4	7.8	1	23	298	320	298	320	0.98
5	13	1.5e-06	0.00081	23.0	0.8	1	23	326	348	326	348	0.99
6	13	1e-05	0.0055	20.4	1.7	1	23	354	376	354	376	0.98
7	13	0.01	5.6	10.9	2.5	1	23	382	405	382	405	0.95
8	13	0.065	36	8.4	4.2	3	23	430	450	429	450	0.98
9	13	0.00017	0.093	16.5	0.4	1	23	454	477	454	477	0.97
10	13	0.0099	5.5	10.9	2.0	1	23	483	506	483	506	0.96
11	13	2.7e-06	0.0015	22.2	1.1	1	23	513	535	513	535	0.98
12	13	0.00013	0.071	16.9	3.3	1	21	541	561	541	563	0.95
13	13	0.0031	1.7	12.5	0.2	1	23	569	591	569	591	0.98

Sequence Information

Coding Sequence: ATGTTAGGAATAGAAGAATCCTTCGGCTGCGATAAAACTATTAAACCGGATGAGATTTGTCGTGGATGTCTATGCAAATCGGATAATCTAAATTCATTGTTCGGCCAAGCGGTTTTGGATCAAGATGAATCAGAGAGTGATGTCGAGGAACCAGCTCAGAATACTTGTGATATCGAACTCACTtatcttaaattatttgaagattGTACGTCAATAAAAGTAGACAAGTTTGATGAAAAGCCGACAagtttgtgctccgattgtattGAGGAATTGGTCGCATCCTATAGCTTTCGCAATAAATGTATCAATTCGGATAATGAACTGGGAACTCTGGTTGTCGAAGTGGAACAGAATGATGATGAAAGGGAATTTTCCGAAGAGGTAGACATTAAATCAGAGacaactaatttaaaaatcgtTGCCATTGAAAATCTCGTCAAAGCAAGTGAAACTCCGGTTGATGACGAGGAAAGTTTTATGTATGAGGACCATTTAATTGAGATGGCAGATGACGAGGATGAGCATCAAGatcattttgaattatgtaCGGAAGACAAAGTGAAACTTGACGACGAATACGATGAGGATCATTCGATTGAGGACGAAAATTCAGGTGACGGCATATTGGAGTGCCGTAtctgtaaatcaaattttgcgAGTTTAAGCGAATTTCGTTTGCACTACGCCGTTCATAATCCAGAACGACCATTTAAATGTTTCGAGAAAAAGTGTAAACAATGCTCGTTTAAAACCCAAGAAGAACTCGAAATGCATAATTTCGTTTATCACTCCCCCGAAAATGAGTCCAAGTGTTCGTACTGTAAAAAGGAATGTAAAAACAAACGGTCGCTTAAAGCCCATATGAAGACGCATTCAACCGATCGACCGCACAAATGCAAAAACTGCGATAAGGCGTTTATTTTTACGCACCATCTAAAAAATCAcgagaaaatacacgaaaatgTCAAGAAATATACTTGCTCTGATTGTCAAAAGTCGTTTATAAATAAAGATCGGCTGGCACTGCACCAACGTATACATACTGGAAAACGGCCGCATAAATGTTCGACCTGTCAGAAAGCGTTTATAAGTGCgtcatcattaaaaattcattatgcGACGCATACCGCCGAAAAACCTTTTTTATGTACTCAGTGTGGAGCTTGCTTTAAACTAGAAGTATTCCTAAACACGCATCTTAAGAGATCACATTCAGTTAACTGTAACACGGATGCTTCAGTAACGAAACCGAAGCCAATCAAACTGAAGGAGGAACAAAAATTCTGCAATTTgtgtaatacaaaatttgaaacttcGATTGAATGTACTCAACACATGAAAACGCATAGCTACAAATACTCATGCCAAATTTGCACTAAACCATTTGCACTCAAATCAAAGCTAGATTCGCACATTAAAAATGCTCACGCGACGAATTTAAGATACATCTGTGGGCAATGTTCAGCAAAATTTCATCGGCCCGATTTGCTGCGTTATCATTATTTGCGAAAACATGCTGATGGGAAATTACCATTTACTTGCGAAATTTGTGATCGCGGATTTATTACGAATAGTGACTATAAGGTACATAAACGAAGGCATTATGGCGAAAAACCGTATGAGTGTAACATATGTGATAAACGGTATGTAACAACGTCCGAATTGCGTCAGCACAAACGGTGTCATACGGGTGAGAAACCATATGTTTGCAATTTATGTGATAAATCTATTGCAACAATTAATTTGCTGCTGTATCACATCAAGCAGCATAATAAAGATGGTAGTATCGATACTGAGCGTTACAATCAAGAGGTGAAGGCGATTGAAAGTATTGCGGATGAGCAGATAGATGAAGTGCAGCCGGAGGCGATggaaaatgattaa
Protein Sequence: MLGIEESFGCDKTIKPDEICRGCLCKSDNLNSLFGQAVLDQDESESDVEEPAQNTCDIELTYLKLFEDCTSIKVDKFDEKPTSLCSDCIEELVASYSFRNKCINSDNELGTLVVEVEQNDDEREFSEEVDIKSETTNLKIVAIENLVKASETPVDDEESFMYEDHLIEMADDEDEHQDHFELCTEDKVKLDDEYDEDHSIEDENSGDGILECRICKSNFASLSEFRLHYAVHNPERPFKCFEKKCKQCSFKTQEELEMHNFVYHSPENESKCSYCKKECKNKRSLKAHMKTHSTDRPHKCKNCDKAFIFTHHLKNHEKIHENVKKYTCSDCQKSFINKDRLALHQRIHTGKRPHKCSTCQKAFISASSLKIHYATHTAEKPFLCTQCGACFKLEVFLNTHLKRSHSVNCNTDASVTKPKPIKLKEEQKFCNLCNTKFETSIECTQHMKTHSYKYSCQICTKPFALKSKLDSHIKNAHATNLRYICGQCSAKFHRPDLLRYHYLRKHADGKLPFTCEICDRGFITNSDYKVHKRRHYGEKPYECNICDKRYVTTSELRQHKRCHTGEKPYVCNLCDKSIATINLLLYHIKQHNKDGSIDTERYNQEVKAIESIADEQIDEVQPEAMEND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01456720;
90% Identity: iTF_01456720;
80% Identity: -