Tver077253.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:99253000-99260497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.2e-06 0.00065 23.3 0.6 2 23 68 89 68 89 0.97 2 10 2.4e-07 0.00013 25.5 0.4 1 23 95 117 95 117 0.98 3 10 7.4e-07 0.00041 23.9 0.3 1 23 123 145 123 145 0.98 4 10 9.2e-06 0.0051 20.5 0.9 5 23 157 175 151 176 0.90 5 10 5.8e-05 0.032 18.0 0.8 1 23 181 203 181 203 0.98 6 10 1.4e-05 0.0079 19.9 2.9 1 23 209 232 209 232 0.97 7 10 8.8e-05 0.049 17.4 4.1 1 23 238 260 238 260 0.98 8 10 6.1e-05 0.034 17.9 1.3 1 23 265 287 265 287 0.99 9 10 0.00014 0.076 16.8 1.5 2 23 294 317 293 318 0.94 10 10 0.00074 0.41 14.5 0.1 5 23 346 365 341 365 0.91
Sequence Information
- Coding Sequence
- ATGCCGCAATCAgtacaacaacagcagcagcaacaaacacaacagcaacaacaacagcagcagcaacaacaacatcagcAGCAGCAAACGTCAAATGATTCATCAGAACAGCATCATGTAAAAAAGAATGAAattagtATTTTTGAGTTGGAACAGTCTTTAATGAATATGGAAAGTGAGTATTTATTTGGAAACGATGGTGTATGCCCATTGTGTTCTAAAACATTTACAAGGCGGGCATCTTTATTAAATCACATTAGGAATCATTCAGCCGaaagaaaatatgtttgtaATTATTGTCAGAAAGgaTTTACCCAAGCAGCTAATTTAAGAAGTCATGAGAggatacatacaaatgataggcCATATATATGTGTGGATTGTGGTAAGGCATtcacacaaataacaaatttaaataatcatcGGCGATTGCATACGGGTGAACGACCTTTTGTTTGTATCGAACAAGACTGTGGGCGATCATTTGCACAGgtaacaaatttaaataatcacaTGAAAACGCATCACAAAATCCAGCAATACGTTTGTAATCAATGTCCGCGAAAATTTAATACCGTtacacaattaaatttacatttaacttCACACACGGGTATACGAGAATTTTTCTGTCCGCAATGTCCAAACAAATCATTCAAACAGCAATCTCATTTATTGCAACATATGAAAGTCCATGGTGCCGACTTTGGTTATCCGTGTACAAAATGTGAtgaaaaatttttgcaattatcCCATCTGGAGCATCATATGAAAATGCACGATACATTCAAATATAAATGTGAAATGTGTACGAGTTCGTTTAATCAAGAAATACTGCTGAAGAAACATATTCAGAGACATATCGATGGCAGATATTTAACGTGTCCGATAGTTGGTTGCTCACAAGGGTTTACGGGTAAACATCAGTTAACCAAACATATACAAATGCATCATGCGAGCGAATCAAATCCAAAGCGATTATCCGTAAAACGGCCGTCCGTTTCAACAAATGggaaacaaaattgttattttgaaagttGTGATGAATCATTTGATGATGTagataatttaaatgaacatcTGAGGACGATACATGGATTGTCGATATTGAAAAATGTTGGGAAAAAGACAAAAATGGATATTATGCTGCTGGAACAGTTAAAAAATGCACGAGAAAATAATGTGGTTGATGCGACAGCGTTAGGgcaaagttttaatattttaatggcGGCAAATGGTGCTCAATTTTTAGCGAACGCAGAACATATGGATCCTAATTCATCGGTGATGTTACAGCCGCAACAGAAACGTATACTAACGGTAAGTTTATTGATGTAA
- Protein Sequence
- MPQSVQQQQQQQTQQQQQQQQQQQHQQQQTSNDSSEQHHVKKNEISIFELEQSLMNMESEYLFGNDGVCPLCSKTFTRRASLLNHIRNHSAERKYVCNYCQKGFTQAANLRSHERIHTNDRPYICVDCGKAFTQITNLNNHRRLHTGERPFVCIEQDCGRSFAQVTNLNNHMKTHHKIQQYVCNQCPRKFNTVTQLNLHLTSHTGIREFFCPQCPNKSFKQQSHLLQHMKVHGADFGYPCTKCDEKFLQLSHLEHHMKMHDTFKYKCEMCTSSFNQEILLKKHIQRHIDGRYLTCPIVGCSQGFTGKHQLTKHIQMHHASESNPKRLSVKRPSVSTNGKQNCYFESCDESFDDVDNLNEHLRTIHGLSILKNVGKKTKMDIMLLEQLKNARENNVVDATALGQSFNILMAANGAQFLANAEHMDPNSSVMLQPQQKRILTVSLLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457767;
- 90% Identity
- iTF_01054609;
- 80% Identity
- -