Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:145317564-145321421[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.3e-06 0.00017 22.9 0.6 2 23 68 89 68 89 0.97

2 11 2.7e-07 3.5e-05 25.1 0.4 1 23 95 117 95 117 0.98

3 11 8.3e-07 0.00011 23.5 0.3 1 23 123 145 123 145 0.98

4 11 1e-05 0.0013 20.1 0.9 5 23 157 175 151 176 0.90

5 11 6.5e-05 0.0084 17.6 0.8 1 23 181 203 181 203 0.98

6 11 1.6e-05 0.0021 19.5 2.9 1 23 209 232 209 232 0.97

7 11 9.9e-05 0.013 17.0 4.1 1 23 238 260 238 260 0.98

8 11 6.8e-05 0.0088 17.5 1.3 1 23 265 287 265 287 0.99

9 11 0.00015 0.02 16.4 1.5 2 23 294 317 293 318 0.94

10 11 0.00069 0.09 14.4 0.5 3 23 342 365 340 365 0.88

11 11 0.0017 0.22 13.1 0.6 3 23 536 557 534 557 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.3e-06	0.00017	22.9	0.6	2	23	68	89	68	89	0.97
2	11	2.7e-07	3.5e-05	25.1	0.4	1	23	95	117	95	117	0.98
3	11	8.3e-07	0.00011	23.5	0.3	1	23	123	145	123	145	0.98
4	11	1e-05	0.0013	20.1	0.9	5	23	157	175	151	176	0.90
5	11	6.5e-05	0.0084	17.6	0.8	1	23	181	203	181	203	0.98
6	11	1.6e-05	0.0021	19.5	2.9	1	23	209	232	209	232	0.97
7	11	9.9e-05	0.013	17.0	4.1	1	23	238	260	238	260	0.98
8	11	6.8e-05	0.0088	17.5	1.3	1	23	265	287	265	287	0.99
9	11	0.00015	0.02	16.4	1.5	2	23	294	317	293	318	0.94
10	11	0.00069	0.09	14.4	0.5	3	23	342	365	340	365	0.88
11	11	0.0017	0.22	13.1	0.6	3	23	536	557	534	557	0.96

Sequence Information

Coding Sequence: ATGCCACAACcagtacaacaacaacagcagcaacaacaaccgcAGCAGCAACAGaatcaacaacaacagcatCATCAACAGCAGCAAACAACTAATGATTCGACAGAACAGCACAATGTGAAAAAGAATGAAattagTATTTTTGAGTTGGAAcagtctttaatgaatatggaaagtgaatatttatttggaaATGATGGAGTATGTCCATTGTGTTCCAAAACATTTACAAGACGAGCATCCTTACTAAATCACATTCGAAATCATTCGGCCGAACGAAAATACGTCTGCAATTATTGTCAAAAAGgtTTTACGCAAGCAGCTAATTTAAGAAGCCATGAAAGGATACATACGAATGATAGGCCATATATATGTGTAGATTGTGGAAAAGCATTTacacaaataacaaatttaaataatcatcgGCGATTGCATACGGGTGAAAGACCTTTTGTTTGTATTGAGCAAGACTGTGGGCGATCTTTTGCTCAGgtaacaaatttaaataatcatatgAAAACTCATCACAAAATCCAACAATACGTTTGTAATCAATGTCCGCGAAAATTTAATACCGTTACACAATTAAACCTTCATTTAACTTCACATACCGGTATACGAGATTTTTTCTGTCCGCAATGCCCGAACAAATCGTTTAAACAGCAATCGCATTTATTGCAGCATATGAAAGTTCATGGTGCTGACTTTGGTTATCCGTGTACAAAATGTGATGAAAAATTTCTACAACTATCCCATCTCGAACATCATATGAAAATGCATGATACATTCAAATATAAATGTGAAATGTGTACTAGTTCGTTTAATCAAGAAATACTGTTGAAGAAACACATACAGAGACATATCGATGGCCGATATCTAACATGCCCGATAGTTGGTTGTTCACAAGGTTTTACTGGAAAACATCAACTAACCAAACATATACAAATGCATCATGCGAGTGAATCGAATCCAAAACGATTATCGGTAAAACGACCGTCTGTCTCAACAAATGGAAAACacaattgttattttgaaagttGTGATGAATCATTTGACGATgtagataatttaaatgaacATCTTAGAACGATACATGGCTTATCGATATtgaaaaatgttggtaaaaaaaCAAAGATGGACATTATGTTACTGGAACAGCTGAAGaatgcacgtgaaaataatGTGGTGGACGCGACAGCGCTAGGgcaaagttttaatattttaatggcGGCAAATGGTGCTCAGTTTTTGGCGAATGCAGAACATTTGGATCCTAATTCGTCAGTGATTTTACAACCCCAACAGAAACGTATACTAACGGTTGGAGGAATTATTACAACTGAACCGACATCAAAtagtaataacaacaacaataatagtagcaacaacaacattaacaaTAATCATACTGATAATGATAAggataaaaaacaacaacacttagCAACAGTACAAGAACAAACAATATCCCATCAACAACTCCATTTGCAAATTCAACAGCAATTACAGctgcagcagcagcaacaacaccaacaaaataatacTAGTGAGCAAGAATTAATTATATCCCATTTAACAAATAGTTTTGCCCAGATTAACTCAATTTGTCAATTTTGTTATAACGTTTTTAAGAGTTCACAAGCGTTGGCGCGCCATATTCAGCGTTTTcatagttaa
Protein Sequence: MPQPVQQQQQQQQPQQQQNQQQQHHQQQQTTNDSTEQHNVKKNEISIFELEQSLMNMESEYLFGNDGVCPLCSKTFTRRASLLNHIRNHSAERKYVCNYCQKGFTQAANLRSHERIHTNDRPYICVDCGKAFTQITNLNNHRRLHTGERPFVCIEQDCGRSFAQVTNLNNHMKTHHKIQQYVCNQCPRKFNTVTQLNLHLTSHTGIRDFFCPQCPNKSFKQQSHLLQHMKVHGADFGYPCTKCDEKFLQLSHLEHHMKMHDTFKYKCEMCTSSFNQEILLKKHIQRHIDGRYLTCPIVGCSQGFTGKHQLTKHIQMHHASESNPKRLSVKRPSVSTNGKHNCYFESCDESFDDVDNLNEHLRTIHGLSILKNVGKKTKMDIMLLEQLKNARENNVVDATALGQSFNILMAANGAQFLANAEHLDPNSSVILQPQQKRILTVGGIITTEPTSNSNNNNNNSSNNNINNNHTDNDKDKKQQHLATVQEQTISHQQLHLQIQQQLQLQQQQQHQQNNTSEQELIISHLTNSFAQINSICQFCYNVFKSSQALARHIQRFHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01455083; iTF_01054609; iTF_01458864; iTF_01460497; iTF_01052510; iTF_01456698; iTF_01053693;
90% Identity: iTF_01456698;
80% Identity: -