Tver063995.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:15867806-15869662[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00012 0.067 17.0 0.6 1 23 117 139 117 139 0.97 2 14 0.00013 0.072 16.9 0.5 1 23 177 199 177 199 0.98 3 14 0.023 13 9.8 3.1 1 23 207 229 207 229 0.98 4 14 3.5e-05 0.019 18.7 0.8 1 23 238 261 238 261 0.97 5 14 2.4e-05 0.013 19.2 0.6 1 23 302 324 302 324 0.99 6 14 0.36 2e+02 6.0 2.5 1 21 333 353 333 355 0.92 7 14 4.7e-06 0.0026 21.4 1.1 1 23 361 383 361 383 0.98 8 14 0.00044 0.24 15.2 3.8 1 23 389 411 389 411 0.97 9 14 1.6e-06 0.00089 22.9 1.5 3 23 424 444 423 444 0.99 10 14 0.00013 0.073 16.8 3.0 1 23 450 472 450 472 0.97 11 14 9.5e-06 0.0053 20.4 3.1 1 23 478 500 478 500 0.97 12 14 2.6e-07 0.00015 25.3 1.1 1 23 506 528 506 528 0.98 13 14 1.6e-06 0.00088 22.9 1.4 1 23 534 556 534 556 0.99 14 14 7.4e-05 0.041 17.6 0.1 1 23 562 584 562 584 0.99
Sequence Information
- Coding Sequence
- ATGAGCAGTATACTAGACGAACAAGGCCTGAATTTCCAAAGCATATGCCGCTTGTGTTTAAAAACGCATGAAGTGTTCCAATCGATTTTTGACGATGTAGAAAGTGGTGTAAAGTACTCTGACATTATTGTCTTGTTTGCCCCAATCGCAATTCATGTAAATGATGGCCTACCGCATAAAATATGCAATAATTGTGCACATagcctaaatttattaaataatttgcgaAGTGTCTGTGTTAAATCGGATACATGGTTACGGGAGAAAGTCGACAGAAAAATCAAGCAGGAAATCGTAGTGCCCCCATCAAACGATAATGACCGCACCATCTTAGACGACCTACAACAATATAAGTGTGAACAGTGCGATGAGATATTTGCGAACGAAGACTGCCTTGAGGTGCACACAAAAGATCATGCCAATGAATCTCAAATTTATAACGAAGAGCCTCATCACAATGATGCCGATGATATCGACAGCGATGATGTTCCACTCATTCAATGCAAGAAAAATGGTAAACGGAAAATTTATACATGCGCTGTTTGTAATAAAGAATTTCCGAGTCGGCATGCTGTAACTCGGCATGCGAATGTGCACAACAATGCCAAGGGGAAAAAATTCAAGTGTGAGGTGtgccatatttatttaatgacaCGAAGAACGCTTTTAAGGCATCGGAAGATTCACTTAAAGCCTGAATCGGCTAAACAATACGCATGTAAACAGTGCGAtggtaaaacttttaaaaatcaaaaatcatacgCAGCCCATATGAGGgtacataaaatttactacgaGACCAAAGAGAACCCGACGGACAGTGAGCAGGACGAGGAGCAAAGCAGCGACgaagaaatgaatgaaatggaTAAACCATCTAAAACGAAACAACTAAAAAGTGTATTTAAGTGTAAAGATTGTTTCCGGGTGTTTGAGAAACAACCGTCTCTTGCTTCGCACGTTCGCGTCCACAAAGAGAATATCACCAAGAAGGAATACATTTGTGACATATGCAATCAAAAATTCATCGCATATTTATTTCTAAAGAGGCATTGGAAATGCCACCCagagaaaaaaattcacaaatgtaGTATGTGCGACGAAGCCTTTGTTTCGAGTGACCAACTAACCGACCACCTTAATAAACATAACAATGTTCGGCCATATGAATGTGATAAGTGtgacaaaaaatttcattcagaCGAAACGTTACGCAAACATCGTTACGTTcataaaccaaattataaaaagagTAAAATCGAACGCCTTTGTCCACATTGTGGCAAAGTGTTCAGCAACAATACGGTATTGCGACAACATTTGAATACCCATTCGGATACGAAACCGTTTGCATGTGATCAGTGTCCTAGTCACTTCGTCTCAAAGCGATACCTAAAGAAGCACATTAAAACGCACGCTCGCTTAAAACCGCATATTTGTGAGGAATGTGGTCATgcattttccaagaaatcatcATTGGTTAAGCATAAGCGTATACATACGGGTGAAAAACCGTACTCGTGTGCCACTTGTGAAAAACGatttaattcatcagaaaatttaaaacgtcATATACGGATCCATACAGGAGAAAAGccttataaatgtaaattctgTGATCGCGCCTTTGCACAAAGCAGTGAATTAACTGGACATACGCGTAAACATTTGGGCGACAATATATATCAATGTGAGGAGTGTCCGGCTGCATTTCGGTTGTACGGAGAACTAAGAGAACATACCCGAATGCATTTTCTAGAAAGGAAGGAAACCAAAGAGGCGACTAatgaaatgatttaa
- Protein Sequence
- MSSILDEQGLNFQSICRLCLKTHEVFQSIFDDVESGVKYSDIIVLFAPIAIHVNDGLPHKICNNCAHSLNLLNNLRSVCVKSDTWLREKVDRKIKQEIVVPPSNDNDRTILDDLQQYKCEQCDEIFANEDCLEVHTKDHANESQIYNEEPHHNDADDIDSDDVPLIQCKKNGKRKIYTCAVCNKEFPSRHAVTRHANVHNNAKGKKFKCEVCHIYLMTRRTLLRHRKIHLKPESAKQYACKQCDGKTFKNQKSYAAHMRVHKIYYETKENPTDSEQDEEQSSDEEMNEMDKPSKTKQLKSVFKCKDCFRVFEKQPSLASHVRVHKENITKKEYICDICNQKFIAYLFLKRHWKCHPEKKIHKCSMCDEAFVSSDQLTDHLNKHNNVRPYECDKCDKKFHSDETLRKHRYVHKPNYKKSKIERLCPHCGKVFSNNTVLRQHLNTHSDTKPFACDQCPSHFVSKRYLKKHIKTHARLKPHICEECGHAFSKKSSLVKHKRIHTGEKPYSCATCEKRFNSSENLKRHIRIHTGEKPYKCKFCDRAFAQSSELTGHTRKHLGDNIYQCEECPAAFRLYGELREHTRMHFLERKETKEATNEMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01456667;
- 90% Identity
- iTF_01456667;
- 80% Identity
- -