Tver063157.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:10037805-10041080[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.2e-05 0.034 17.9 0.5 1 23 254 276 254 276 0.98 2 13 9.2e-05 0.051 17.3 1.5 2 23 283 304 282 304 0.96 3 13 5.4e-05 0.03 18.1 0.1 3 23 311 331 311 331 0.99 4 13 0.00017 0.094 16.5 0.6 3 23 363 383 362 383 0.97 5 13 0.00015 0.084 16.6 0.4 1 23 469 492 469 492 0.95 6 13 0.0068 3.8 11.4 0.2 1 21 499 519 499 520 0.91 7 13 5e-05 0.028 18.2 4.5 1 23 587 609 587 609 0.98 8 13 3.4e-08 1.9e-05 28.1 2.2 1 23 616 638 616 638 0.98 9 13 9.6e-08 5.3e-05 26.7 1.7 3 23 650 670 648 670 0.96 10 13 2.5e-05 0.014 19.1 2.8 1 23 676 698 676 698 0.99 11 13 1.3e-06 0.0007 23.2 2.2 3 23 706 726 704 726 0.97 12 13 4.1e-07 0.00023 24.7 3.1 1 23 732 754 732 754 0.99 13 13 0.0015 0.85 13.5 0.1 1 23 760 782 760 782 0.98
Sequence Information
- Coding Sequence
- ATGGatgaaaatatatcaaatagtttagaatataatttgaatCGGATATGTAGATTATGTTTGAACGAATATGATGAGCTCAAATCAATATTCCAATTGAGTGAATATTACAATTCACAGCCATTGCATGAGATCATTATGGCTTGTGCCCAAATCGAGATTGTGGAAGATGATGGTTTGCCAAATAGAATTTGTAGTGGCTGTGTAAGACAAATGAATATGGCttatgaattcaaaataagatgTGAACAAAGTGATAATAAGCTCCGATCGtatataataagaaaatatcCTACTAGAAATATTAAGTTTGCAATCTCTGAATCATCTTCAAGCTATATTAAAGAAGAAGATCAAGACTATTCCTTAGGTGCTGTTATTAAACCAGAAATATCGATAATAGAAGGTGATCCTTTAAATGGAAATTTCTATACGAGTAATGGACGTGAATTCGACGccataaatcaatttaataatcaacATAGTGTAGATAATGTTGAACAGATAAATggaattcaaaatgaaatgtgtggtatacagCCGCAGCAGCAGCAACAGCAAAGTACATCATGCGACGACGATTCAAATAATGATTTCAACGATAATTGTGATGATCTgttgaatgatgatgatgacgacgatgatgacgatgaacaaGTTAAAAAGGACGAATTATCGATCTATATAAAAAATGATCCAGATTCCGATTTTAATGAAGATAAATTTGATTATCAGTCAGCACGTAATGAACAAGGCAGGTACAGTTGTCATATATGTGAAAAGACTTTGGTTGATGCCAAAGGGTTGAAACTGCATATTCGTCTTCACACGGGAAACAAATTGAAAAGATGCGATATTTGCAATAGAGgatttgCCAAACAAAATCACTTGAATCGTCATTTGGTCATTCATAAGGGTAAACCAGTCGGCTGTGACGAATGTGGTCTATCGTTTCCATCGCTTagtgaattaaaaattcatgTTCTTACTCACGGTGGTACAAATATAAAaAAACAAGTTAAATCCAGTTATAATGAAAATCGGGAATGCGATATAAATGATAATTCACCGGAAAAATATGCACTCTGTAAAATATGTGACACAACATTTACACAAATTAAATCACTCAAAATTCATTTACAGGCCCATATAGATGTGaattcatttcaaaatgtgAATCTGCATACAAAACTTTTTCTATtcgatttaacaaaaatcacacCAAATATCGAAGACCATGATACCCTAATAAAATACGTTATTAATGATATAAAAGCTAATATTTTAACACGATTTTATcaaataacaaatcaaaatggtTACGAATATCAATTATCTGATTCTGAATCGGAAAATGACGAAGAAATGCATGAAATGAATAAGGACTGTATTACAAATGTTCAACATGAATGTCCCGAGTGTGATTTCATCTTTGATCGatcgtataaattaaatttacatttagaaataGAACACAGTGATTATCAAAATCCATTCGTCTGCATTGATTGTGGCCGAAAATTTCCTACCGAATGGTTACTGAATCGCCATTTTAAACGccaatgtaataataaattgaaacaatattCGTGcagtttatgtaaatttaaatttatgtggcAGTACAGTTACGAGTTGCATAATGAGAAGTTTCATTcgggcaaaaaaataaaacgttctACAATTGCGTCTTCATTAGATTTACTGACGGATGATAGAAAATCAAGATCATtgaaagaaaaaccaaaagaaaagaaTTTTAGGTGTGTTACATGTAACAAATCCTTTTATCGTCAAGAGCATTTGGATCGACATACTAAAATTCATATTCCATCAGAAAAGAAATTTGAATGCACAATTTGTCAGAAAAAGTTTAATCGCAAGGATAATTTACGGTCACACATGAGGGTGCACAGAGATGATAAAGAAGACACGGATAAACATCTCTGTGTTTATTGTGGTAGAAGTTtctcaaattcatcaaatttaatagTTCATATGCGACGTCATACTGGAGAAAAACCATACAAATGTGATTTATGTGATAAAGGTTTCCCTCGATCATCTGATTTGCAATGCCATCGAAGAACACACACAGGCGAAAAGCCTTGCCTTTGTACAATTTGTGGTAAAGGTTTTTCTAGATCGAACAAACTTGTACGACATATGCGCATTCATACGGGCGTTCGCCCCTATAAATGTACGCATTGTGATCGAGCTTTTACACAATCAAATGATTTAACGCTTCACATAAGGCGACATACTGGGGAAAAACCATATGTATGTGGAATATGTGGTGATCGGTTTATTCAGGGAACTGCGCTTCAAACGCATCGAAGAGTGCATGGTCATTATGAGGAAAATCAACCAGCACCATTTGCAAGTATCAGTGTAAATAATCCTAATCGGTATACAAACGCAAATCGAGTTAATCGCATTGGATTCATTGCACCAGTTACTGCGACAACGGCATCAACATCAAATTCGGTTATAAAGCCAATTGTATCAAGGCGATCCACaccaaattcaacatttttaactcGTTCTACTACAACAGCGTCATCCATAAACACAGACGAGTCTTCATCAAATCTAATTGAGCAACAGCAACAAATGAATTCAACAATGCCAGTAAATTCAATAGATGTAACACATTTACCACGATCCCAGTTATCTAGTTCAACAACTCCTACCCTTATTGGGGATCCCTCCCAACCAACTAATTTAGTTGGAAACACTAATGCTAATAATCTTCATAATACGCCACCAATACTACCATCACCTCATCCTACATCACAGCGAATGCTACCAAATATTGGGTTCCCATATGCTCCAAatctagaaatatttacaattttagaaatgtaa
- Protein Sequence
- MDENISNSLEYNLNRICRLCLNEYDELKSIFQLSEYYNSQPLHEIIMACAQIEIVEDDGLPNRICSGCVRQMNMAYEFKIRCEQSDNKLRSYIIRKYPTRNIKFAISESSSSYIKEEDQDYSLGAVIKPEISIIEGDPLNGNFYTSNGREFDAINQFNNQHSVDNVEQINGIQNEMCGIQPQQQQQQSTSCDDDSNNDFNDNCDDLLNDDDDDDDDDEQVKKDELSIYIKNDPDSDFNEDKFDYQSARNEQGRYSCHICEKTLVDAKGLKLHIRLHTGNKLKRCDICNRGFAKQNHLNRHLVIHKGKPVGCDECGLSFPSLSELKIHVLTHGGTNIKKQVKSSYNENRECDINDNSPEKYALCKICDTTFTQIKSLKIHLQAHIDVNSFQNVNLHTKLFLFDLTKITPNIEDHDTLIKYVINDIKANILTRFYQITNQNGYEYQLSDSESENDEEMHEMNKDCITNVQHECPECDFIFDRSYKLNLHLEIEHSDYQNPFVCIDCGRKFPTEWLLNRHFKRQCNNKLKQYSCSLCKFKFMWQYSYELHNEKFHSGKKIKRSTIASSLDLLTDDRKSRSLKEKPKEKNFRCVTCNKSFYRQEHLDRHTKIHIPSEKKFECTICQKKFNRKDNLRSHMRVHRDDKEDTDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYKCTHCDRAFTQSNDLTLHIRRHTGEKPYVCGICGDRFIQGTALQTHRRVHGHYEENQPAPFASISVNNPNRYTNANRVNRIGFIAPVTATTASTSNSVIKPIVSRRSTPNSTFLTRSTTTASSINTDESSSNLIEQQQQMNSTMPVNSIDVTHLPRSQLSSSTTPTLIGDPSQPTNLVGNTNANNLHNTPPILPSPHPTSQRMLPNIGFPYAPNLEIFTILEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455062;
- 90% Identity
- iTF_01456661;
- 80% Identity
- -