Tver061868.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- Mblk-1
- Assembly
- GCA_958295665.1
- Location
- OY282558.1:455395358-455409208[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-16 1.7e-13 53.4 0.0 1 45 427 472 427 472 0.97 2 2 2.1e-17 1.9e-14 56.4 0.0 1 43 850 893 850 895 0.95
Sequence Information
- Coding Sequence
- ATGGGACGCAGGAAATGGAAACTTTATCAAGAATTAATTGCAAGATCCAATCAAAACAGTATAAATTCTGCGAGCACATTTCATCAAGAAACTTCCGTAGTAAATCAAAACAGTGCTGTTCAACAAAACACACAACAATTACAACAAcatcatcaacaacaacaacaacaacaacaggaaCGACCAAATATAATATCACAACAACTCGACgacgaaaatttcatttcatcatCTCAAACGTTattagaaaatcaattaaaacaaaaaacgacgACGGCGACGACGACAATAAAGTGCGAaacaataaatatcaaaaaagagATCGACACTTCAGTGACGGAAACAGaaaatcaagaaaatttagaattgcAAGACGACGAAGTAACAAAGTATATAGTGAAAATAGAGCCAAAACACttagaaaatatcaaaaattctagTATTAAGAATAACAATAGTATACATTCGATAGAAGACGGTGAGGAACAAGACGACGACGAGGAGGTGGGTGAGGTGGGGGaagtggaaaatcaaaaaaattccgCAGAACGCCACGGTGATAGAAAAGAGGAGGAAGACAATAGTGAACTACTAGTTGAAAGTGAAACACCAAACATTCCAATTGATTGGAAGCCGCAAGATAAGTGTTATTTTTGTGTGGATGGTAAATTATTAACCGTGAACGAGAACGGAGATTTAGTGGCCGAGTCTGGTTACTCGGGTCAAACCGATACAGACGTCGCCCTTAGAGAAACACCTGTTGATTCAGATAGTGAGTCCAGTGGTAGCTATTCTGGATCAGATTTACGCCAGTCTGCAAATATATCGGGTAACGCGGCCGCCGCAGCTGCACAAACAGCAGCCGTTAGTAAAACATTGGAAAATTTACTTAAAGGCACAATACCAAATAATATGACTTCGCTTGAATCAATGGCTGCCACAATACAAGCAGTAGCCGCATTACAAGGATTACATTCCGTTCAAGGAATTAATTCATTGTATCCAGGTCTGTTTTATCAAGCACTTGCCCAACCACAAGCCGGAACTGGCAATCATAGTGGCCGAGATGACGATTCTGTTTTATCGATGAACGAGTCGGCAATAAGGCATCATCACCAAGCGGCCGGGTCAAGTGAAGTGACGACAAATGCGGAACAACCACTCGATCTAAGTGCCAAACCGTGTGCATCTACACTGCCTGTTAATGAGACACGTACACATTTAACGGGTGTGAGaGCAAAACCACGGGTTTCAACAGTCCCTGGCCGTAGAACATACACAGAAGATGAGTTGCAGCGTGCCTTACAAGATATAATCAGCGGTAAGCTAGGTACAAGACGCGCTGCTGTGTTATACGGAATTCCGCGTTCAACATTACGGAATAAAGTATATAAGCTGTCGATGGAACAGAAGCGTGAGGCTCTAATACAACCACCACCTTCAGTCGTTATGCCCGATGACATGGAGGAAAAAGATGTATCAGACGCGGACGATGATAAAGACATTGAGAAAGACTTACTTAAGACATCAAATCCGTTAGCATCATCACATTTACCGAACCAAAATGACCGTTTACATAAAGATAATGAACATAATCGGCCAATTATAGGTACCCCGCCTGCATTACATCAGCAACAACATGTATCGCCTCAATCTCAGACCCCACCAATTATGCATCAAGATCTATACGCCACCAATGTTATGCTTCAAAGTCTACTATTTCAGGGTGGGTTTATGTCTCAAAAACCCGAGGAAAGAGCCGTGTTCTTGCAAAATTTTGTACTACAAcaggaaatgttaaaaaatgcaGTACGCTCACAGCAGAGTAATGATAACCAAATGAATAATGGAAAACCATCAACGAGTCCTTTAGACGCACGATTcccattattacaacaaaaaatcaattgtaaaacagAACCATCTGAATTAGTATCACCACATGAGCCGAATGAAGGTGACGAATCAAATGTGATATTAAAAATTCCGTCCTTCAAACTAACCGCAACCGGTGCttgtggtggtggtggtggtggtagtagtggaaataatattcctggtACATCACCTGGGTCTGCAACCTCCCCTGTAATTAAGTCGAATAACAGCAATCAAAATCTATTTCCACCACACCAATCCGCACTTCATCTGCCGCATCACAGTAATAATTCATCGCATTCCCGAAATAGTCCACCGGTGAATTCACCCGGGAATTTACGGCACGGTTTATCGCCAACACTTAAACGTGAGAATAGTGATTCACAATCACCGCCAGTGGCACAAAAAAGTATGTTGACACTGCATGAGGTGATAGCGAGTAGCATTAGTAAAAGTTTTCAACAACAATCGGGTCATCATGCATCGATGGGTGGGGACAGTGATCCAAGTAAGAGGCCTCAAATATCggtgataaaaaatttaggtgGAACTGATATATCACGATTTGCACATAGTCCGAACATGATGAGTTCTAGTTCGCTGCACGCATCACTAACGGGAACGGGAGGCAAAGGGACAAGACCAAAACGTGGTAAATACCGGAACTATGATCGAGATAGCCTAGTCGAAGCGGTTAAAGCGGTCCAGCGTGGTGAAATGTCAGTGCATAGGGCTGGTAGTTATTATGGTGTGCCACACTCGACACTCGAATACAAAGTAAAGGAAAGACATTTAATGCGGCCACGAAAACGAGAACCTAAACCTCAACCGCTAGACAGCGGTACATCATCAAGTGCGACATCATCGAGCACAAAAGATATAAGTGCATCGAGTACATTCCGCCCGGTAGATAAATCAAAATCACTTGTACAACAgcaacagcagcaacaacaacaacaaccaaagcCATCACTAAAAACACCTCCACCACAATTTTCATCACCATCACCAAACGGTATGAAAATGCCAATATTCGATCCGGCAATGGCAGCAATACAATATACATCACAATTATTATGGCCACATCCGCCCGGTGGTTTTACTGGTTTGCCAATGGATTTTCCAAGGCCCGTGCCCGGTTCAACCCAATTCCCCACAAATCCGGAACAATTTTTTGCCACCCAAATGATGCAAAAATTTCAGGAGAATTCATCAAAAATGCAACTAAATAAACCGCccgcaaataatttatatgatgTAACAACATCGAATGGTTCATTACTCGATGGTATTATACGACAAAGTTTGGATCGTGGCAAAAATGAAATGGTTGGCCATAGTAGTCTACTCGATCAATTGAGTAAAAGTAATTGTTCGAGTTCGGTGGCAAGTGATGATACTAATTCGAATAATGGTGGAACAAAACGTTCGGCCGGTTCACCATTAAATTATTCACATATAGATATAAAACGGGAACGTTCTAGTCCAATAACAACGTCAGAAAGCGATCGTGATACACCTGATTCGGAGGTGCACAGTGATGTAACTATGCCGTCGGCAACGATGAGTAAAGGTGCCGAACATTTATTAAGAATACGTGAAGATCTTACATTAAGATCGGGATCAGCTGATGAACaacaccaaacaaatttaaaacgtatGGAAGACCATAATGGTGGTGGTGGTGCTTTAATACCTAATACAACAGCAACCAGTCAACAATCCGATATGGATGATGGAacatag
- Protein Sequence
- MGRRKWKLYQELIARSNQNSINSASTFHQETSVVNQNSAVQQNTQQLQQHHQQQQQQQQERPNIISQQLDDENFISSSQTLLENQLKQKTTTATTTIKCETINIKKEIDTSVTETENQENLELQDDEVTKYIVKIEPKHLENIKNSSIKNNNSIHSIEDGEEQDDDEEVGEVGEVENQKNSAERHGDRKEEEDNSELLVESETPNIPIDWKPQDKCYFCVDGKLLTVNENGDLVAESGYSGQTDTDVALRETPVDSDSESSGSYSGSDLRQSANISGNAAAAAAQTAAVSKTLENLLKGTIPNNMTSLESMAATIQAVAALQGLHSVQGINSLYPGLFYQALAQPQAGTGNHSGRDDDSVLSMNESAIRHHHQAAGSSEVTTNAEQPLDLSAKPCASTLPVNETRTHLTGVRAKPRVSTVPGRRTYTEDELQRALQDIISGKLGTRRAAVLYGIPRSTLRNKVYKLSMEQKREALIQPPPSVVMPDDMEEKDVSDADDDKDIEKDLLKTSNPLASSHLPNQNDRLHKDNEHNRPIIGTPPALHQQQHVSPQSQTPPIMHQDLYATNVMLQSLLFQGGFMSQKPEERAVFLQNFVLQQEMLKNAVRSQQSNDNQMNNGKPSTSPLDARFPLLQQKINCKTEPSELVSPHEPNEGDESNVILKIPSFKLTATGACGGGGGGSSGNNIPGTSPGSATSPVIKSNNSNQNLFPPHQSALHLPHHSNNSSHSRNSPPVNSPGNLRHGLSPTLKRENSDSQSPPVAQKSMLTLHEVIASSISKSFQQQSGHHASMGGDSDPSKRPQISVIKNLGGTDISRFAHSPNMMSSSSLHASLTGTGGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPLDSGTSSSATSSSTKDISASSTFRPVDKSKSLVQQQQQQQQQQPKPSLKTPPPQFSSPSPNGMKMPIFDPAMAAIQYTSQLLWPHPPGGFTGLPMDFPRPVPGSTQFPTNPEQFFATQMMQKFQENSSKMQLNKPPANNLYDVTTSNGSLLDGIIRQSLDRGKNEMVGHSSLLDQLSKSNCSSSVASDDTNSNNGGTKRSAGSPLNYSHIDIKRERSSPITTSESDRDTPDSEVHSDVTMPSATMSKGAEHLLRIREDLTLRSGSADEQHQTNLKRMEDHNGGGGALIPNTTATSQQSDMDDGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457246;
- 90% Identity
- -
- 80% Identity
- -