Tver098491.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- Dp
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:252000782-252002598[+]
Transcription Factor Domain
- TF Family
- E2F
- Domain
- E2F_TDP domain
- PFAM
- PF02319
- TF Group
- Helix-turn-helix
- Description
- This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6 7.9e+04 -3.2 0.0 17 40 80 108 77 109 0.69 2 2 1.6e-24 7.8e-20 73.7 0.0 2 65 146 223 145 223 0.97
Sequence Information
- Coding Sequence
- ATGGGCATTTTGAAATCCACAGGTTCACAGCAAATAATTAAAGTTCTTCCTGGCGGTTCATCGGGAAAACAAGTACCCGGATTAAAAATAGTCAAAGTTGTATCGAGCAAAGAAGCAAACCGGATATTTTCGCAAAACAATATGGCCGGACCACATAATATACGTACAGCTGGACAAAACTTAACACATACTCGGGGCGGTATTCCAATTAATCATACATCACATAGTGAAACAATTAAGTTAAGTCCATCCCAAATGGTAAGAATATCGTCAAATGCGAATGCTCTAAAAATGGTTGGATcatcaaatcaaacaaaacgAATAATTGCAGTACCGCCACCACAGGTGATGGCCTCAACTACAACATCAATTAAAAAAGCaGCCGCCACATCATCTGGACGTGTACAACCGCGAAGACGGAAAACAGATAAGGTTGGTAAAGGGTTGCGACATTTTTCGATGAAAGTTTGCGAAAAGGTTGAGGAAAAAGGTGTTACAACTTACAATGAAGTAGCCGATGAATTAGTGCAAGAAGAAATTGAGGGTCAACCAATTGATCCGATGAATTATGACCAAAAGAATATACGACGTCGTGTCTACGATGCCTTAAATGTTCTTATGGCgatgaatattatttcaaagGAGAAAAAGGAAATTCGCTGGATAGGATTGCCTACCAATTCGATACAGCAATGTAATTCACTCGAAATCGAAAATCAAAAGCGACGCAAACGCATAGAAGAGAAACAACGAAAACTCCGTGATCTTCTATTGAAGCAGGTCTCATTCAAAAGCCTTGTTACACGAAATAAAGAAGCTGAAGAAAAGGGCATAATTCCTACGCCAGATTCAGCGATCCAGTTGCCTTTCATTATTGTTAATACGCATAAGAAAACTCAAACTAATTGTAGTATAGCTAATGATAAatctgaatatttttttacatttgaagacacatttcaaaTTCACGATGATGTGGAAGTATTGAAATTAATGGGCTTACTTTTAGGTTTGGACAAAGGGGAATGTGCTACTGAAGATATAGAACGGGCTAAGTCTATGGTACCAAAGGCATTCAGGAAGTATATAGAAAtGTACGGTCGGGGACAAGACGAATCACCGACAGAAGACTACGATCCTTCTTACCATGAATATATGGATAGCAGTGATTTTATAACACCTAAAACTGAATACTGCGAAGAAGATGAGGAGGATGAAATGGTTGCAAGTGATAGTGATATTGATTAA
- Protein Sequence
- MGILKSTGSQQIIKVLPGGSSGKQVPGLKIVKVVSSKEANRIFSQNNMAGPHNIRTAGQNLTHTRGGIPINHTSHSETIKLSPSQMVRISSNANALKMVGSSNQTKRIIAVPPPQVMASTTTSIKKAAATSSGRVQPRRRKTDKVGKGLRHFSMKVCEKVEEKGVTTYNEVADELVQEEIEGQPIDPMNYDQKNIRRRVYDALNVLMAMNIISKEKKEIRWIGLPTNSIQQCNSLEIENQKRRKRIEEKQRKLRDLLLKQVSFKSLVTRNKEAEEKGIIPTPDSAIQLPFIIVNTHKKTQTNCSIANDKSEYFFTFEDTFQIHDDVEVLKLMGLLLGLDKGECATEDIERAKSMVPKAFRKYIEMYGRGQDESPTEDYDPSYHEYMDSSDFITPKTEYCEEDEEDEMVASDSDID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054113;
- 90% Identity
- iTF_01455461; iTF_01454658; iTF_01051719; iTF_01054113; iTF_01052974; iTF_01458136; iTF_01457129;
- 80% Identity
- -