Tunc023522.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596381.1:110543281-110543756[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.8e-09 5.3e-06 27.8 0.1 23 103 5 88 2 100 0.83
Sequence Information
- Coding Sequence
- atggaATTCAAACGTAATAGTGTAATTGCACTGTATTTGGGTGGAAATTCACAAACAGCAATAGTTCGTCAGCTCCAGCATTTGaatgtgaataaaatgtttgtgtatcGAACCATAACTCGATACAACGAAACTGGTAGCATCGCTAAACGCAACAGAGGCGGTCCTAAAAAGACAGcaacatcaaaagaaatgatacgaAAGGTGAAGAAACGAATCCAACGAAATCCTCGTCAAAGTGCCAATCAATTAGCCGCACGTCTACATGTTTCACGATACAGCATTCaaaccatattgaaaaatgaactACACTTGAAGCCCTACAAGATACAAAAAGTTCAAGATCTTACGGaggcacaaaaaaaagttaggcTTGAAAGAACACGAGCATTGAAGGCCTTGGCCGAACtatgtgaataa
- Protein Sequence
- MEFKRNSVIALYLGGNSQTAIVRQLQHLNVNKMFVYRTITRYNETGSIAKRNRGGPKKTATSKEMIRKVKKRIQRNPRQSANQLAARLHVSRYSIQTILKNELHLKPYKIQKVQDLTEAQKKVRLERTRALKALAELCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458305; iTF_00002531; iTF_01458308; iTF_01054283; iTF_01457299; iTF_01458329; iTF_01458330; iTF_01375775; iTF_01458311; iTF_01054280; iTF_00002537; iTF_01459594; iTF_01054286; iTF_01054287; iTF_01375792; iTF_01458309; iTF_00002535; iTF_01054281; iTF_01459600; iTF_01457298; iTF_01458332; iTF_01454803;
- 90% Identity
- iTF_01054287;
- 80% Identity
- -