Tlat023803.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:7096722-7105621[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00032 3.2 9.0 0.1 21 44 154 177 147 185 0.87 2 5 0.017 1.6e+02 3.6 0.5 23 46 184 207 180 213 0.85 3 5 0.0097 95 4.3 0.4 23 46 212 235 208 241 0.83 4 5 0.0033 32 5.8 0.0 21 43 238 260 231 269 0.86 5 5 1.3e-05 0.13 13.5 0.2 23 44 268 289 264 294 0.90
Sequence Information
- Coding Sequence
- ATGATGATAAACCGAGGTTTTATGATATGGCGTCAATATCCTAAAAGGCGCGAATTGCCCTCATTGCTGTACTATAAAGACCTTAGATTTAAATATCAGTGGACGGCATACAATAGAAAGTTTGATGGACATGAAATTCAAGTAGCCCATACAGAAATTCAGCCCAGTAATATAGCGACCGAAGTTAAAGACCCAGTTATTAGTAATCTACACAATAATACTCATCACAttaatagcaataataacaGCAGTAGTAATAATCATGTTAGGACGGAAACAAATTATTTGGAACACTACAAGAAGATAAAATGTACACAGTGTCGAAAACGTTTCGATACCGAGGCCCAAATGTTGGCACATCGAGAACGACACATTATCGAATCGACATTTTCGTGTGGTGTGTGCCCCAAAAAATTCACCAGCCATAGTAGTTTGTGGAAACATATTAAATCTCATACGGGCGAACGTCCATTTATATGTGAAATATGCCATAAGGGATTCACGCAGCTGGCCAATTTACAGCGCCATCATTTTGTTCATAATGGTTTACGACCGTACGAATGTCCAGTGTGCCAGAAACGATTCTCTCAACATGCCAACATGATCAAACATCAATTACTTCATAcaggTCAAAGACCGTATGAATGTCCTGTGTGTCAAAAACGTTTTACACAACATGCGAATATGATAAAACATCAGCGAGTGCATACAGGCGAAAAGCCATTCAAATGCAAAGTCTGTGATAAATCATTTGCTCAGAgagcaaatttaaaaaaacatgaaaTGGTTCATACTGGTGTTCGACCCCATAGCTGTTCAATATGTTTTAGGACATATGCCCAATCGgcaaatttgaaaaaacatCTACTCGTACACGAAAAGGAACAGAAACAAGCAAGAGATTTTGTATTGACAAATTCTTGTACACAATGCCATAATGTAACTGATAAGACAGCATACGATGAACATTTACGAACATCTCATATACCAATGGGATTAACCGCCATAAATTATTGTAGTCCAATAGCACATCCAATCCAGCACAATCCCCATGGTCCTCCGCCTCCACCTCCGCCCCATTTAGCACCCGTATTACATCCTGGCCTAACGCCATTAAATAATAGTggtattaaattagaaaaaccaACCGAAGTGAAAAAAGAGCGCCCCGAACAGGAAGGAGCGGACGaatcaaatttatcaaatgGTGATATATCCGAGAATTATTCCAGAGTAAAGGTGTga
- Protein Sequence
- MMINRGFMIWRQYPKRRELPSLLYYKDLRFKYQWTAYNRKFDGHEIQVAHTEIQPSNIATEVKDPVISNLHNNTHHINSNNNSSSNNHVRTETNYLEHYKKIKCTQCRKRFDTEAQMLAHRERHIIESTFSCGVCPKKFTSHSSLWKHIKSHTGERPFICEICHKGFTQLANLQRHHFVHNGLRPYECPVCQKRFSQHANMIKHQLLHTGQRPYECPVCQKRFTQHANMIKHQRVHTGEKPFKCKVCDKSFAQRANLKKHEMVHTGVRPHSCSICFRTYAQSANLKKHLLVHEKEQKQARDFVLTNSCTQCHNVTDKTAYDEHLRTSHIPMGLTAINYCSPIAHPIQHNPHGPPPPPPPHLAPVLHPGLTPLNNSGIKLEKPTEVKKERPEQEGADESNLSNGDISENYSRVKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457822;
- 90% Identity
- iTF_01457822;
- 80% Identity
- iTF_01457822;