Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010738.1:174296221-174306645[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0018 18 6.7 0.1 23 47 9 33 6 38 0.85

2 16 0.054 5.3e+02 1.9 0.1 21 45 35 59 31 67 0.80

3 16 1.3 1.3e+04 -2.5 0.0 22 45 64 87 59 90 0.82

4 16 0.011 1.1e+02 4.1 0.0 21 46 91 116 87 122 0.78

5 16 0.017 1.6e+02 3.6 0.0 21 46 119 144 116 150 0.89

6 16 0.0098 96 4.3 0.0 22 52 148 178 145 180 0.85

7 16 0.022 2.1e+02 3.2 0.1 21 46 175 200 171 206 0.91

8 16 0.8 7.8e+03 -1.8 0.0 23 44 205 226 199 230 0.78

9 16 0.002 20 6.5 0.0 21 46 231 256 223 262 0.90

10 16 0.018 1.8e+02 3.5 0.0 26 49 264 287 257 291 0.82

11 16 0.027 2.6e+02 2.9 0.0 21 49 287 315 283 318 0.86

12 16 0.013 1.3e+02 3.9 0.1 21 46 315 340 308 346 0.86

13 16 0.0015 15 6.9 0.2 21 51 343 373 338 375 0.86

14 16 0.011 1.1e+02 4.1 0.1 21 52 371 402 368 403 0.87

15 16 0.02 2e+02 3.3 0.1 21 48 399 426 395 431 0.85

16 16 0.015 1.5e+02 3.7 0.1 21 46 427 452 423 454 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0018	18	6.7	0.1	23	47	9	33	6	38	0.85
2	16	0.054	5.3e+02	1.9	0.1	21	45	35	59	31	67	0.80
3	16	1.3	1.3e+04	-2.5	0.0	22	45	64	87	59	90	0.82
4	16	0.011	1.1e+02	4.1	0.0	21	46	91	116	87	122	0.78
5	16	0.017	1.6e+02	3.6	0.0	21	46	119	144	116	150	0.89
6	16	0.0098	96	4.3	0.0	22	52	148	178	145	180	0.85
7	16	0.022	2.1e+02	3.2	0.1	21	46	175	200	171	206	0.91
8	16	0.8	7.8e+03	-1.8	0.0	23	44	205	226	199	230	0.78
9	16	0.002	20	6.5	0.0	21	46	231	256	223	262	0.90
10	16	0.018	1.8e+02	3.5	0.0	26	49	264	287	257	291	0.82
11	16	0.027	2.6e+02	2.9	0.0	21	49	287	315	283	318	0.86
12	16	0.013	1.3e+02	3.9	0.1	21	46	315	340	308	346	0.86
13	16	0.0015	15	6.9	0.2	21	51	343	373	338	375	0.86
14	16	0.011	1.1e+02	4.1	0.1	21	52	371	402	368	403	0.87
15	16	0.02	2e+02	3.3	0.1	21	48	399	426	395	431	0.85
16	16	0.015	1.5e+02	3.7	0.1	21	46	427	452	423	454	0.90

Sequence Information

Coding Sequence: atgattaataattatattgctCGAAAACCATTTACATGTGAAATATGTGCGAAGGCATTTCGATACAAAGCTAATTTACAGGTGCATACCCGGATTCATACTGGAGAAAAGCCATTCAAATGTGAAATATGTTTGAAATCGTTTCGGGTTAATGATCATTTGCAAATACACAAAAGAATTCATACTGGAGAAAAGCCATTTAAATGTCTAGAATGTCCAATGGAATTTCGCAGCAGTGGGCCATTGCAGATTCATATGAAAGTTCATTCCGGTGAAAAACCATTTACATGTGAAGTTTGCACAAAATCATTTCGATTAAAATCACATTTAGATgTTCATATGAGAATACATACTGGGGAGAAACCGTTTAAATGTGAAATATGTTCAAAAGAATTTCGTGTTAGTGCTCCTCTACAAATTCATATGAAAATTCATACTGGTGAAAAATCGTATACGTGTGAAGTGTGTTTTAAACCATTTCGAGAAAAATCTCATCTACAGGATCACATAAGGATTCATACTGGTGAAAAGCCATTTATTTGTGAACTATGCTCGAAACCGTTTCGTGTAAAAGCTCATTTACAGAGGCACATGAAAGTACATTCGGAAGAGAATGGTTACAAATGTGAGGTGTGTGGCAATATATTCCGCGATGGTTATCAATTAGAGGTGCACAAAAATATCCATACTGGAGAAAAACCGTTCAAGTGTGAGATTTGTTCAAAAGATTTTCGTGGAAATTCTCATTTGCAgAGACACATGAAAATTCACACTGGcgataaaacatttatttgtgaCATTTGCTACAAAGATTTCCGTGAAAATGCAACTTTGGTCGCTCACATGCGTATACATACTGGCGAAAAACCATTCCATTGCGGCGTTTGCACCAAAGAATTCCGAGGTCAATCGGCACTGCACAAACACATGAAAATCCATACAGGTGAAAAACCATATCAATGCGATGTGTGCAACAAACATTTCCGCGAGGCTGTTCATCTAAGAGTACACAAACGAATTCACACAGGTGAGAAACCATTCAAATGTGAAATTTGCCATAAAGAATTTCGCTGTAGCAGCACATTGCAGTACCATATGCGAATACATACGGGCGAGAAACCGTATAGTTGCGAAATTTGTTTGAAACCATTTCGCGAGAAAGGTCATCTACAAGTCCACATGCGTATTCATACACAAGAAAAACCATATCCGTGCCTCGATTGCACCAAAACGTTTCGGGATTCTGGACAATTAAGCCGTCACAAGAAAATCCATTCCGGTGAAAAACCGTACAAATGTATAATTTGCGGAAAGGCATTCCGCGAGAAATGTCATCTAAAGTCACACATGAATATACACGTGGGTGATGAAAATTTAGGACGTGAAATAGCAAACGCCATGTACAACCATTCGGACGAGCTTGTTTTCATCAGCCACTATCAGCCGAATTTAAATTCCGATCCCAATGCACCACAGCTAAATGTTCATATAAAATGCGAACCGAACATAGATGAACTGGCCATAATCGAACCAACCGATCATTTACGGCTGTCGATGTTTAAGGACGAACCAGATTACGCGTTGGAACAATTATAA
Protein Sequence: MINNYIARKPFTCEICAKAFRYKANLQVHTRIHTGEKPFKCEICLKSFRVNDHLQIHKRIHTGEKPFKCLECPMEFRSSGPLQIHMKVHSGEKPFTCEVCTKSFRLKSHLDVHMRIHTGEKPFKCEICSKEFRVSAPLQIHMKIHTGEKSYTCEVCFKPFREKSHLQDHIRIHTGEKPFICELCSKPFRVKAHLQRHMKVHSEENGYKCEVCGNIFRDGYQLEVHKNIHTGEKPFKCEICSKDFRGNSHLQRHMKIHTGDKTFICDICYKDFRENATLVAHMRIHTGEKPFHCGVCTKEFRGQSALHKHMKIHTGEKPYQCDVCNKHFREAVHLRVHKRIHTGEKPFKCEICHKEFRCSSTLQYHMRIHTGEKPYSCEICLKPFREKGHLQVHMRIHTQEKPYPCLDCTKTFRDSGQLSRHKKIHSGEKPYKCIICGKAFREKCHLKSHMNIHVGDENLGREIANAMYNHSDELVFISHYQPNLNSDPNAPQLNVHIKCEPNIDELAIIEPTDHLRLSMFKDEPDYALEQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01457738;
90% Identity: iTF_01457738;
80% Identity: iTF_01457738;