Basic Information

Insect: Tipula lateralis
Gene Symbol: L
Assembly: GCA_963932295.1
Location: OZ010737.1:83706278-83709861[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.45 59 5.5 5.8 1 23 3 25 3 25 0.98

2 15 1.8e-07 2.3e-05 25.7 3.2 1 23 31 53 31 53 0.99

3 15 2e-05 0.0025 19.2 0.2 1 23 59 81 59 81 0.98

4 15 0.069 9 8.1 1.3 2 23 199 221 198 221 0.96

5 15 0.032 4.1 9.1 0.4 1 23 355 377 355 377 0.96

6 15 0.042 5.4 8.7 1.1 1 23 385 407 385 407 0.94

7 15 6.3e-05 0.0081 17.6 0.8 1 23 415 439 415 439 0.94

8 15 0.0038 0.49 12.0 0.0 1 23 444 467 444 467 0.97

9 15 0.25 33 6.3 1.8 1 23 474 497 474 497 0.96

10 15 0.00025 0.033 15.7 1.4 1 23 529 552 529 553 0.97

11 15 0.0001 0.013 17.0 0.4 2 23 757 779 756 779 0.96

12 15 0.0032 0.41 12.3 0.1 1 23 785 807 785 807 0.98

13 15 0.025 3.2 9.5 0.5 2 23 946 967 945 967 0.95

14 15 0.00031 0.04 15.4 0.1 1 23 977 999 977 999 0.96

15 15 0.36 47 5.8 0.2 1 23 1006 1028 1006 1028 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.45	59	5.5	5.8	1	23	3	25	3	25	0.98
2	15	1.8e-07	2.3e-05	25.7	3.2	1	23	31	53	31	53	0.99
3	15	2e-05	0.0025	19.2	0.2	1	23	59	81	59	81	0.98
4	15	0.069	9	8.1	1.3	2	23	199	221	198	221	0.96
5	15	0.032	4.1	9.1	0.4	1	23	355	377	355	377	0.96
6	15	0.042	5.4	8.7	1.1	1	23	385	407	385	407	0.94
7	15	6.3e-05	0.0081	17.6	0.8	1	23	415	439	415	439	0.94
8	15	0.0038	0.49	12.0	0.0	1	23	444	467	444	467	0.97
9	15	0.25	33	6.3	1.8	1	23	474	497	474	497	0.96
10	15	0.00025	0.033	15.7	1.4	1	23	529	552	529	553	0.97
11	15	0.0001	0.013	17.0	0.4	2	23	757	779	756	779	0.96
12	15	0.0032	0.41	12.3	0.1	1	23	785	807	785	807	0.98
13	15	0.025	3.2	9.5	0.5	2	23	946	967	945	967	0.95
14	15	0.00031	0.04	15.4	0.1	1	23	977	999	977	999	0.96
15	15	0.36	47	5.8	0.2	1	23	1006	1028	1006	1028	0.95

Sequence Information

Coding Sequence: ATGCCATTTAAATGCGACTACTGTGCCCGACTATTTAAACACAAACGATCGCGTGATCGTCATACAAAACTGCATACGGGTGATCGACGCTACAAATGTCCACATTGTGAGGCGGCATTTTCACGAAGTGATCATCTTAAAATACATATGAAGACGCATGATAATCAGAAACCATTTCAATGTACCGTTTGTAATCGTGGCTATAATACAGCTGCTGCATTAACATCGCACatgcaaaatcataaaaaacagGCAGCTTTGTTGGCGAACGGCGGAAACGgaggtaatttaaattatagtcCACGATCAACTGGATCGACCGGATCGAGTACATCAAGTTTGCATAAACGCAAATACTCCAATATACCGCTCGATCAATTAAATCCCCAACAGCAGCAACAGCAAATACATCAGCCTCAACAAAAACTACTGCGATCAATGATCTCGTGtgtattttgtacaaaatcagattttcaaaatgttgatcaATTAAATTATCACGTACAGGCGATGCATCATCCGCCAACAACTCAAACTACATCGGCTGGAAGTAATCCCGCGAGTTTAGCATCAAGTCCGGTGAATCCAATGATTTCTTGCGAATTTTGTACCATGAAATTTACTTCCATCCAACAAATATTCCAACATTTAAAAACCACGCATATGGATCGAATAAGTAGCCCAAATTCATATTTGGAACATTTCAATCGTAATTTAATGTCAACGTACGATATGGCACAGTCAGCATTATCGCCGACTTCACTACTATATCGCAATAAATTTCTTCCTGTCGTAAAGCAAGAGTCAAAAACTCCGGAAACAACTATCGACCCACCGGCGAGTTCGATTACGACACCGCCTGTAATTAAACATGAAATTGAGGATCCACAAGATCAGGAAAGTCCGACCGATTTAAGCCAAcctaaatctaaaatatttatcaaagatGAAAGTAATCATAGCTCAGCAAGTataagtaataataacaatcataGTAACGTCAGTAATGGCGCTCGTACACCCGAAACCATTCCCAAATCGCCGATCCACCAGAGTGGAACATTTCTATGTAATCAATGTAATGCAGCATTGCCGGATTTTGAATCGTTCCGAACACATTTGAAGACCCATCTTGAATCAGGAGTTGGCAGCTATTTATGCCAACACTGTGGAATTCCGTTTAACGATCAACAAATTTACGAAAAGCATTTATTTTCACACTTCTTGATGAATGTTACAGAATATCCATGTCCGCAAACttgtaacaaaaattttacGAAGCAAGAGGAATATCAAAAGCATATGATCGATACCCACATTCAAACTGTATACAGATGCGAAATTTGTGCCGAAATATTCGATACAAAAATTTCGATACAAGTGCACATGAGTGTTGCCCATCCGAACGAAGTAAAATTGTATCGATGTTCGGCGTGTATGGAAGTGTATCGAAATGAACGTGATTTTCGACATCATGTTCGGGCACGACACATCGTTTCAGGTGCCGTCCAATGCATATTTTGCCGTCAAATCTGTTCATCCGAACTCGATATGCATTTTCATTTGGCCGCACATGCACGACAATTTCGATGTCCTGTTTGTCCCGAATCGTTTCATGTCGAATTTCTACTCGATCGACATATGCAAACAGCACATCATCATGGAGTGGCGGGCAGTGGAACACCGGATCGTCCCAAAGAATCGTATCATCATAAAATTAcgaccaacaacaacaataataataataacacaattGATTATCATTTGGGTGGGGCGGCAAAACCCAGCCATCATCAATCGTATCCTTTTAATCCGaccaaattttataatcaacTTCAGATTGATACGCTAAGCGCAAAACATCCAAATTTATTACATGGATTGTACGATTCGATCAGCAAAAGTCAACGATATCCACCCGATAATGGCTTTTTGagtccaaataaaaatatactcgGCTTGTACAATCATCCCGAAATGATcgcaaaaataaatagtttttataatcaGAGCGAAAATGGTGAACGTATATATCCGCCACAGTTACAACCACATTCGCAACAATCTTCGTCGGCTACAACTACGGCGTCACGATACTCGAATCACACAGACGCAACTATAAAAAGTCATTTGAGTGGGACATACGCGACACATCACGGCGACAAAGGTTACAGTTGTGGAATGTGTGAGCGTAATGATTTCAGCACCGAAAATGAAGTGCACTCGCATCGTAAACTTGTGCACAATCTCAAAACTGGTGTTAGTCTTCGCTGTGCGTATTGTAATGGTGACTTCCGATCAAGaagcGAGCTCGAGAATCATATGAAAGTATCGCATAATACGTCCGGAAAACACAAATGTCTTATTTGTGACGAAATATTTCCATCGCCAGCTGTTTTGGCCGAACACAAATTAACACATTGTAAAGTTGGCCCGTCTGGACGTTGTTCCCACTGTCTCATCGAATTGAAAGATGTCACATTTTTCAAATCACACTTGGCCGAGCATAACGGGCACGATATACCAATACAATGTATATGTTGTCGGCAAACGCTGAACTCAGAATTTGAAATTGGGTTGCATGCCAAATTTCACACTAAATCGAGCGAGATCAAAGAAAATACGTGTGCACTATGCCTCGAGACATTACCGCCGAATGTCGAGACAAGGGTTTGCGAATCATGCTACaagaaacataatttaaatataaaaacaaatatattacaaCAGCAACataatagtagtagtagtaatgTTAGTACCAGTAATAATCACAATAGTAGTAATAGTTGTAACACCAACAATAGAGATAGTATAAGTATGAACCAAGAAGTGTATTGTAATTTGTGCAAGAAATCGTTAACGAACCAACTTCGGCTGCAGGAACATTTAATCGAACATACGTTCGCCGGTTGTGAAGATCGTggctatatatgttatatatgttcgTCGGTGTTTACATCGCCCAGTGGTTTACAATCTCATATAATCGAACATGGACTAAACGCCCGACCATACGATTGTAATTTATGTCCGGCGAAATATTTCTTCAGGGCCGAATTGGACAATCACACGATTGAGCACgagaataataatattgtggcgactaaatcaaataatatgcCAATACCATCGACGTCGATCAATCACATTGTTGAGAAAccggaaaatttaaaaaaagaaatatccGCAACCGAAGAAAGTCGTACCGATGAAGACGATATAAAACATCATCCCGACGAGGAGGAAGAATATATCGAAGTTGAAAATTTGGAAACAAACCACGAAACTAAGCTCGATAACAAGTAG
Protein Sequence: MPFKCDYCARLFKHKRSRDRHTKLHTGDRRYKCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQAALLANGGNGGNLNYSPRSTGSTGSSTSSLHKRKYSNIPLDQLNPQQQQQQIHQPQQKLLRSMISCVFCTKSDFQNVDQLNYHVQAMHHPPTTQTTSAGSNPASLASSPVNPMISCEFCTMKFTSIQQIFQHLKTTHMDRISSPNSYLEHFNRNLMSTYDMAQSALSPTSLLYRNKFLPVVKQESKTPETTIDPPASSITTPPVIKHEIEDPQDQESPTDLSQPKSKIFIKDESNHSSASISNNNNHSNVSNGARTPETIPKSPIHQSGTFLCNQCNAALPDFESFRTHLKTHLESGVGSYLCQHCGIPFNDQQIYEKHLFSHFLMNVTEYPCPQTCNKNFTKQEEYQKHMIDTHIQTVYRCEICAEIFDTKISIQVHMSVAHPNEVKLYRCSACMEVYRNERDFRHHVRARHIVSGAVQCIFCRQICSSELDMHFHLAAHARQFRCPVCPESFHVEFLLDRHMQTAHHHGVAGSGTPDRPKESYHHKITTNNNNNNNNTIDYHLGGAAKPSHHQSYPFNPTKFYNQLQIDTLSAKHPNLLHGLYDSISKSQRYPPDNGFLSPNKNILGLYNHPEMIAKINSFYNQSENGERIYPPQLQPHSQQSSSATTTASRYSNHTDATIKSHLSGTYATHHGDKGYSCGMCERNDFSTENEVHSHRKLVHNLKTGVSLRCAYCNGDFRSRSELENHMKVSHNTSGKHKCLICDEIFPSPAVLAEHKLTHCKVGPSGRCSHCLIELKDVTFFKSHLAEHNGHDIPIQCICCRQTLNSEFEIGLHAKFHTKSSEIKENTCALCLETLPPNVETRVCESCYKKHNLNIKTNILQQQHNSSSSNVSTSNNHNSSNSCNTNNRDSISMNQEVYCNLCKKSLTNQLRLQEHLIEHTFAGCEDRGYICYICSSVFTSPSGLQSHIIEHGLNARPYDCNLCPAKYFFRAELDNHTIEHENNNIVATKSNNMPIPSTSINHIVEKPENLKKEISATEESRTDEDDIKHHPDEEEEYIEVENLETNHETKLDNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01460553;
90% Identity: -
80% Identity: -