Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:2894063-2897398[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3e-06 0.00039 21.8 1.7 1 23 302 324 302 324 0.98

2 9 6e-08 7.8e-06 27.1 1.6 3 23 332 352 330 352 0.98

3 9 0.00026 0.034 15.7 0.3 1 23 358 380 358 380 0.98

4 9 5e-06 0.00065 21.1 0.2 1 23 386 408 386 408 0.98

5 9 2.2e-05 0.0028 19.1 1.7 2 23 497 518 496 518 0.96

6 9 2.8e-09 3.6e-07 31.3 1.6 1 23 524 546 524 546 0.98

7 9 0.0097 1.3 10.7 1.0 3 23 554 574 552 574 0.97

8 9 0.00019 0.024 16.1 0.9 1 23 580 602 580 602 0.99

9 9 0.016 2 10.1 1.3 1 23 608 632 608 632 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3e-06	0.00039	21.8	1.7	1	23	302	324	302	324	0.98
2	9	6e-08	7.8e-06	27.1	1.6	3	23	332	352	330	352	0.98
3	9	0.00026	0.034	15.7	0.3	1	23	358	380	358	380	0.98
4	9	5e-06	0.00065	21.1	0.2	1	23	386	408	386	408	0.98
5	9	2.2e-05	0.0028	19.1	1.7	2	23	497	518	496	518	0.96
6	9	2.8e-09	3.6e-07	31.3	1.6	1	23	524	546	524	546	0.98
7	9	0.0097	1.3	10.7	1.0	3	23	554	574	552	574	0.97
8	9	0.00019	0.024	16.1	0.9	1	23	580	602	580	602	0.99
9	9	0.016	2	10.1	1.3	1	23	608	632	608	632	0.95

Sequence Information

Coding Sequence: ATGGCAATAAATTTTTCGGCCTCATTTGCTGCTTGTTTGGCTGCTGGATTAAAAGTACCTCGACAAATAATGTACTGTATCTCGCAGGATACAGGGGCAccatatgttttatataaagattCACAAGAGGCTGCTGAGCGGGGCGCCCTTACGGGACAGTGGGGAACGGAAATATATCAATCGGCAATACAACAAAGTCCGCAACAAGCTCATGTCACAACGCATAATGCAACACAAATAACAGCCGTGcaacaaaatcaacaacagcaagggcaacaacaacaacaacagtcaAATCAACAACAAACTGCACCACAAAGTCCTCAGGGTGATGAAAATACAACAGGAAATAATAGTGGAAGTATAAATAGTCCAGCTCATAGTCCGACATATCAAAGCAATAATAATCCGGAAATGGACGAGGATGCCGCCACAGCTcaaGTTACCACGATGCACAATCAACAGCAAGCACAATCAAATCAAACAACTGTGACCGTAACGCAAAATACTCAACAAAATTCGGAGCAGCAGACAATCGAACTGCAGCAAAACGATCAAAATGGACAAGCGCAACAAATACAACAGCAGCAAACGacacaacagcagcagcaagcCCAAAATAGTAATACTCAACCGAATGGTCCACCATGTTTTGCTGAACCGACCCAACAATCGGAATTAGCTCAGTATTATGCACAACGGCATCCAGCTGCACAAACTGCGATGTTGGCACCTGCCGGATTTCCACCTCTTCACTATTTAAACAAAACGATTCCAATAAATGGTGGCATGGATCAAAGTACAATTGAAACGTATACAATGCCTGATCTACTGCCCGGCCATCAAATGGGACATCACAATCAATCGCCGAGTAGTAAATCGAAAAATTCCGATTTACGATTATTCAAATGTTTGACGTGTGGTAaagattttaaacaaaaaagtacATTGCTGCAGCATGAACGAATACATACCGATGCACGACCATTTGGTTGTCCTGAGTGTGGCAAACGTTTTCGACAGCAATCACATCTCACACAACACGTTCGGATACACGCCAACGAGAAACCATTTTCATGTGGGTTATGTCCCCGAAGTTTCAGACAGCGGGCCATTCTCAACCAGCATGTTCGCATCCATTCGGGTGAGAAGCCGTACGCGTGCCCAGAGTGTGGCAAATCATTTCGCCAGAGGGCCATCCTATATCAACATGTGCGCACCCATCAAGatgtGTCACCACacttgatatttaaaaatggtCCCCATCCGACACTTTGGCCAAGTGATGTACCATATCCGGGCGACGAGACAAAAGACGAAAATGGTTCGGGCTTCAACGAGGATGGTTCGCCCAGCGAAGGTCGTACGTTGTTCCCACAAAAAGGTGGCATACATTATCCTGTTTACTTTAAAGATGCGAAAGGACAAAAAGGTTTATTACCCGATGTTATACAACATGGACGATCGTCTGGTATGCCCTTGTATGTACGTTGCCCAATATGCCAAAAGGAATTTAAACAGAAAAGTACATTGTTACAACATGGTTGTATACATATAGAATCTAGGCCATATCCATGTCCAGAATGTGGTAAACGTTTTCGACAACAATCACATCTAACCCAACATTTACGGATACACACAAATGAAAAACCATTCGGATGTTTATATTGTTCGAGGTATTTTAGGCAGCGAACAATATTAAATCAAcATATACGAATACATACTGGTGAGAAGCCGTACAAATGTGTACAATGCGGAAAAGACTTTAGACAAAAGGCCATATTAGATCAACATACCAGAACGCATCAGggtGATCGTCCATTCTGTTGTCCGATGCCAAATTGCCGAAGGCGTTTTGCTACCGAACAAGAAGTGAAGAAGCATATCGACAATCATATGAATCCGCATGCAACAAAATCACGTCGCGGCGGTAATGGCGATGGTCCAAAACCATCAACTTTTTTAACTAtggataaacaaacaaatttaataccGCGTATGGGACCCGTTGTTAAACATGAATTATATTTTCCGCAATGTTATGCACCGCCATTTAATCAGGCATTTGGTGGGCAACAACAAGCTCATAGTGGTAGTACAGCAGCAACAACTGTTACGCCAACTGTACAAGCGGTGGCTCAGTGA
Protein Sequence: MAINFSASFAACLAAGLKVPRQIMYCISQDTGAPYVLYKDSQEAAERGALTGQWGTEIYQSAIQQSPQQAHVTTHNATQITAVQQNQQQQGQQQQQQSNQQQTAPQSPQGDENTTGNNSGSINSPAHSPTYQSNNNPEMDEDAATAQVTTMHNQQQAQSNQTTVTVTQNTQQNSEQQTIELQQNDQNGQAQQIQQQQTTQQQQQAQNSNTQPNGPPCFAEPTQQSELAQYYAQRHPAAQTAMLAPAGFPPLHYLNKTIPINGGMDQSTIETYTMPDLLPGHQMGHHNQSPSSKSKNSDLRLFKCLTCGKDFKQKSTLLQHERIHTDARPFGCPECGKRFRQQSHLTQHVRIHANEKPFSCGLCPRSFRQRAILNQHVRIHSGEKPYACPECGKSFRQRAILYQHVRTHQDVSPHLIFKNGPHPTLWPSDVPYPGDETKDENGSGFNEDGSPSEGRTLFPQKGGIHYPVYFKDAKGQKGLLPDVIQHGRSSGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCLYCSRYFRQRTILNQHIRIHTGEKPYKCVQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEQEVKKHIDNHMNPHATKSRRGGNGDGPKPSTFLTMDKQTNLIPRMGPVVKHELYFPQCYAPPFNQAFGGQQQAHSGSTAATTVTPTVQAVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01456694;
90% Identity: iTF_01054625;
80% Identity: -