Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:2723626-2727066[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00071 0.092 14.3 0.2 2 23 233 254 232 254 0.97

2 17 1.4 1.8e+02 4.0 3.4 1 23 315 335 315 335 0.81

3 17 5.3e-05 0.0068 17.9 1.3 2 23 342 364 342 364 0.97

4 17 0.0002 0.026 16.1 4.4 1 23 376 398 376 398 0.98

5 17 0.00028 0.037 15.6 1.1 1 23 404 426 404 426 0.99

6 17 1.4e-06 0.00018 22.9 1.1 1 23 432 454 432 454 0.98

7 17 0.00073 0.094 14.3 0.6 2 23 495 516 494 516 0.96

8 17 0.00021 0.027 16.0 1.6 1 23 676 698 676 698 0.97

9 17 0.016 2 10.1 2.1 1 23 704 727 704 727 0.93

10 17 1.8 2.4e+02 3.6 0.2 1 23 756 778 756 778 0.94

11 17 0.14 18 7.1 2.5 2 23 785 806 784 806 0.97

12 17 6.9e-05 0.009 17.5 1.4 1 23 923 945 923 945 0.98

13 17 0.0014 0.18 13.4 3.3 1 23 951 973 951 973 0.96

14 17 7.6e-06 0.00099 20.5 0.8 1 23 979 1001 979 1001 0.98

15 17 2.5e-05 0.0032 18.9 0.5 1 23 1013 1035 1013 1035 0.98

16 17 0.00041 0.053 15.1 2.7 1 23 1041 1063 1041 1063 0.98

17 17 5.5e-05 0.0071 17.8 1.7 1 23 1069 1091 1069 1091 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00071	0.092	14.3	0.2	2	23	233	254	232	254	0.97
2	17	1.4	1.8e+02	4.0	3.4	1	23	315	335	315	335	0.81
3	17	5.3e-05	0.0068	17.9	1.3	2	23	342	364	342	364	0.97
4	17	0.0002	0.026	16.1	4.4	1	23	376	398	376	398	0.98
5	17	0.00028	0.037	15.6	1.1	1	23	404	426	404	426	0.99
6	17	1.4e-06	0.00018	22.9	1.1	1	23	432	454	432	454	0.98
7	17	0.00073	0.094	14.3	0.6	2	23	495	516	494	516	0.96
8	17	0.00021	0.027	16.0	1.6	1	23	676	698	676	698	0.97
9	17	0.016	2	10.1	2.1	1	23	704	727	704	727	0.93
10	17	1.8	2.4e+02	3.6	0.2	1	23	756	778	756	778	0.94
11	17	0.14	18	7.1	2.5	2	23	785	806	784	806	0.97
12	17	6.9e-05	0.009	17.5	1.4	1	23	923	945	923	945	0.98
13	17	0.0014	0.18	13.4	3.3	1	23	951	973	951	973	0.96
14	17	7.6e-06	0.00099	20.5	0.8	1	23	979	1001	979	1001	0.98
15	17	2.5e-05	0.0032	18.9	0.5	1	23	1013	1035	1013	1035	0.98
16	17	0.00041	0.053	15.1	2.7	1	23	1041	1063	1041	1063	0.98
17	17	5.5e-05	0.0071	17.8	1.7	1	23	1069	1091	1069	1091	0.97

Sequence Information

Coding Sequence: ATGGAACGATATACATTAGCAATAAAGCAGGAAAATGAATACGAAATTACAGAAAGCGGTATATTAAATGGAAGCATTAGTGGCCTCGGCGAGAATATCACAATTGCCCAGTATGAGATCCAACCACAGCAAGAAATTCATCATGGTACAATGATGATTCAACATCCTCAAATTATAATACATCAGCAAAGGATACCACAACAccatttacaacaacaacatcatatACATCAAATTCAGCATATTTCACCATCATCGACCCCTAATCACTTACAACATCATTCGATCCAAATACATCATGAAGAAGAATCTAATGGAAGTAATTCTATATTGTATACAAACAATACACATTCGCAGTGTACTACACCACATATACAGATACAAATACATCATGCAGATGGAAGTAGGCCAAATTCAGTGCAGCATATACCTTCGGAGCTAGTACAGGTGTCTAGTCCGATACAAATGCAGTCAtcacattttcataataatcaaCACCAACAGATTATTATTCATCAGCCATTGTCCACAATAATGGAAGAAATGGAACCGCAGGAACTCGAAATAGCACATCAAGAAGAAATTATTACAATACCAGCGCAAATAATGCAAAAAGTAGAATATCCCGAATTAACAATTACCCCACAAcatgaacaacaacaatatataccacaagataatattaacattaatattGTTTGTAAAGTATGTAAGGAAAATTTTGTTGGGGTTGGAAATTTTACAGAACATATGAAAACTCATATGCCACACGAGCATGTATATGAAGAAGATGTTATGGGTGCCACTCGAATAGAAATGGTAGATTTATCCGAAACGCTAAATATTGATAAAAGTGCATATCCTTGTGCTTTTTGTAACAAGAAATATATTTGGCATAAATTTCTGGTAACTCACTCGAAGTGTCATAAAACACCAGCACCATTTATTTGTACAATATGTGGCCAAAGTTTTGATTGTCTGTACTACGATCATATGAAGACTCATATATTGAGTGAAGGACGAACATGTTCGAAATGTAATGAGAATTTTACAACACTCAAAGCTCTAAAAAACCACGTTAGGACGATACATAATCCCCATCTTAGTGGAGACGCTAATCATCAGCACAAGTGTAGCATATGTGGAAAACATTATAAAGCGTTATCGTATCTTAAAGAACACGAGAGAACGCATACTGGAGAGAAACCATATAAATGTGATGTTTGTGGAAAGGCTTTTGCCAAATATGGTTGTTGGGCCGAACACAAAAAAACTCATTCGATTGTTAAAGCCTTTAAGTGCCCTATGTGCCCGAAAGCCTTCACGAAACGAAGGTATCTAAAGGCACATCTGCTTAGGCATCCGAAAACACTAGATCTCGATAAGATATTCGTTGAAGATCGCGATGGAGAATTGCCtagcagaaaatttttatttgctcCTAATAAACCAAAACCCGTTCCGAAAGTGCAGCCAAAATTAGAATGTCCTATATGTTATaaggaatttaaaaaaatgagataTTTACGATCGCATGTTATTCGACATCCAGAAGACTTTGTTCGACAGAAGTTAGGTTTAAAGCCCGGAACGGCTATACCGCCTTTATTGCCAGCCGTATTAAATCGAAAGTCTGCGGTGATAGCGGCAACAGATAGTAATGAACATGAGTTAACGAATATTCAAATTGAAACCAAACTCGAAATATCGTCTGAAGATGAATCAACCGACGATGAAAACTTCGGTGAAGAAGAAGAGGATGCTGTTGGTATGGAAAAAGGAGAACTCAAAGCCGATATTGAATACGCAGATAACGAGTTATTTAATAATGATGGATTCAACGAGGATGAGGAAGACTTTGATGAAAATACGGTGAAGGAACAAATTCCTAGTCCCGAAGAAATTAAAAGCACCATACCTGAAGATAGTAGCAATAATAATACTGACGTACTGGATATCAATATAAAACCGGCTGTCGaagaaatttcatcaaatatCACGAAATCAACTGCCGAACCTACCATGTTTTGTTGTACTATATGCCAAAAGATATTCAACCAGGCGAAATTATTGCAAGATCACGAACAAGTTCACTATGGTGAAAATCCTTACAAATGCTGCTACTGTAACACTGTATTTGTAATGTGGGCTCGCTATGAAGATCACATGACATTTGAACATAGTGATTATCCGATGCAAGCTGATGCGGACGaagagaaaaaaatgaaaaattttagccgCTACTGTAATACAGAGGAAAAATCGTTTACATGTAGAACATGTGGAGATACATTTTTAAGTGAGAATATGCTGGAGGAACATGAAGAAATGCATTTAGGAGAAGAACCATTAAAATGTCATGTGTGTGCTGAACATTTtgcaatacaaacaaaatataccGAACATTTAAGAGAGCACGACAACATAGGAGATTCCTTTGAAAATGAGGAAGAAGAGGACGACGAAGATATGAAAAGTGAGGATGAAGTCGTCGAAATCAAAAGTGTAAAACATATAACTCAACCCAATCAAAACGAAGGACGTGTACTTCGAAGTCGGGCAATTAAAAGTAGAAGTTCGAATTTACGTAATCACCGAATAAGAAGATTGCGACGAAAAactcgaaaaataataaaaaaacataagcCAGAACCTGAACAAAGTAGCGATGAACACCaagaagaaaacgaagaacttcgagAGTGTGGTGGTGACGAAATTGAGATGGAAGTGAAAGAAGAGCTCAAAGAGAATTCTAAAAAGCGTTTCAAATGTAAGATCTGTGGTAAATTGTATACAACGCTATTCTACTTAAAAGAACATTTATCGATTCATTCTGGTAAGCGTCCTCACAAATGTGATACGTGCGGTAAAACATTCGCCGCCTCATCATGTTATCGTGAACATTTAGAATTGCATTCCACACAGAAGAAACACAAGTGTGATGTATGTGGTATGAACTTTGCAGTCGCTCGATATTTAAAAGCTCATATGCGAAGGCATGCCCAAAAAACTCTACCGGATGGTGGTAAAAGATATAACTGCCCTCAATGCGATAAGAAGTATCAATCTAAGACAGCGCTGGTAGAGCATATGAAAATTCATACGGGAGAAGCTCCGTTTACATGTACTTATTGTAGTAAAGTTTTTATGCTCACCTCATCATTTCGTGATCACATGCTTAAACAcgaaaatattgaaatgcaTCAGTGCCCATTCTGTCCAAAAAGCTTTATAAAGGCGCGATACTTGCAACAGCATTTGGTTCGACACATTCAAAAACTAGACAGCGAAGATAATCTGGCAGCTAATTCAAAGAAAAATGAAACCAAAGCCCAATTCGATCAGGAGTTTGAAGATACGAGTAGCAGTGGTTATCCAGACTCAGAAGATGAATTTTTTAAGACACCGCCTTCAGATGTTGGTCAAACACttgtataa
Protein Sequence: MERYTLAIKQENEYEITESGILNGSISGLGENITIAQYEIQPQQEIHHGTMMIQHPQIIIHQQRIPQHHLQQQHHIHQIQHISPSSTPNHLQHHSIQIHHEEESNGSNSILYTNNTHSQCTTPHIQIQIHHADGSRPNSVQHIPSELVQVSSPIQMQSSHFHNNQHQQIIIHQPLSTIMEEMEPQELEIAHQEEIITIPAQIMQKVEYPELTITPQHEQQQYIPQDNININIVCKVCKENFVGVGNFTEHMKTHMPHEHVYEEDVMGATRIEMVDLSETLNIDKSAYPCAFCNKKYIWHKFLVTHSKCHKTPAPFICTICGQSFDCLYYDHMKTHILSEGRTCSKCNENFTTLKALKNHVRTIHNPHLSGDANHQHKCSICGKHYKALSYLKEHERTHTGEKPYKCDVCGKAFAKYGCWAEHKKTHSIVKAFKCPMCPKAFTKRRYLKAHLLRHPKTLDLDKIFVEDRDGELPSRKFLFAPNKPKPVPKVQPKLECPICYKEFKKMRYLRSHVIRHPEDFVRQKLGLKPGTAIPPLLPAVLNRKSAVIAATDSNEHELTNIQIETKLEISSEDESTDDENFGEEEEDAVGMEKGELKADIEYADNELFNNDGFNEDEEDFDENTVKEQIPSPEEIKSTIPEDSSNNNTDVLDINIKPAVEEISSNITKSTAEPTMFCCTICQKIFNQAKLLQDHEQVHYGENPYKCCYCNTVFVMWARYEDHMTFEHSDYPMQADADEEKKMKNFSRYCNTEEKSFTCRTCGDTFLSENMLEEHEEMHLGEEPLKCHVCAEHFAIQTKYTEHLREHDNIGDSFENEEEEDDEDMKSEDEVVEIKSVKHITQPNQNEGRVLRSRAIKSRSSNLRNHRIRRLRRKTRKIIKKHKPEPEQSSDEHQEENEELRECGGDEIEMEVKEELKENSKKRFKCKICGKLYTTLFYLKEHLSIHSGKRPHKCDTCGKTFAASSCYREHLELHSTQKKHKCDVCGMNFAVARYLKAHMRRHAQKTLPDGGKRYNCPQCDKKYQSKTALVEHMKIHTGEAPFTCTYCSKVFMLTSSFRDHMLKHENIEMHQCPFCPKSFIKARYLQQHLVRHIQKLDSEDNLAANSKKNETKAQFDQEFEDTSSSGYPDSEDEFFKTPPSDVGQTLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01458865;
90% Identity: -
80% Identity: -