Tlat017938.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula lateralis
Gene Symbol
-
Assembly
GCA_963932295.1
Location
OZ010737.1:103307615-103313149[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00018 0.023 16.2 0.7 1 23 366 388 366 388 0.94
2 12 0.00014 0.019 16.5 1.8 1 23 397 419 397 419 0.98
3 12 0.00041 0.054 15.1 0.5 2 23 427 448 426 448 0.97
4 12 1.2e-06 0.00016 23.0 1.8 1 23 454 476 454 476 0.99
5 12 4e-05 0.0052 18.2 1.1 1 23 483 505 483 505 0.98
6 12 1.4e-05 0.0018 19.7 1.7 1 23 511 533 511 533 0.96
7 12 5.3e-05 0.0069 17.9 0.3 1 23 539 561 539 561 0.98
8 12 0.00056 0.072 14.7 0.7 1 23 567 590 567 590 0.96
9 12 0.00018 0.023 16.2 2.1 1 23 596 619 596 619 0.94
10 12 0.00016 0.021 16.3 2.5 1 23 625 647 625 647 0.99
11 12 0.00012 0.016 16.7 1.5 1 23 653 675 653 675 0.97
12 12 0.00014 0.019 16.5 0.1 1 22 681 702 681 705 0.92

Sequence Information

Coding Sequence
atgAGAAATGATGATGGTGAGTACGCCAAAAATCAGGAACAGAATATGGGAATAATGAAAATTGGGACTTGTTTCGTATGTAATTCAGGCTTTGGCGCCGAGAAAAATTCTGAACTTAATTTGTTTAAGGATCGTACATCAATCAATGATTTATCTCCATCTTTCATTCTCTCTCAAATATTGAACCGTCCTTTGGCAAACGACAATGTACACTCAGATTCTTTGtgtcaaaattgttttaaactatGCCTCGAATTTGAGGAATTAGAACAGCGGTTAGTTGAAATTCGACTCGAATTCATTAGAAATTTCAACAATACCGCAATTACATACAATTTAGAACCAGTTGAACTTGAGGATGATGAGGTTGAGGACGATAACATAGAGAACGATCATTTGGTGGAGGAAGATgaatgtgatgatgatgagcaGGTAATTGATGAACAAAAGGATGATATGTTATCGAACCCTAACCgtgaagaagaaattgaaacgGGTGTAATGAGAAAGATTTCACATCATCAAGAAATTTTAGAACAATATGAAATGGATAATGAAGTGGAAAAAGAAACTAGAGttattattttagataatttacAAGCTCCAAATTTAATACAAAGTGATGAACGTGATGATGCTACGTCATATTCGATCGATGCTTCTCACTTTAGAGAAGAATATCTAAGCGAAGAAAATCAAAGTATGGTCGAGGTGGTAGCTGAATCTGAAGATTATGTTCATTTAATTGAACACGAAAATCAAATGTCGACAAACGATGAAAACTCTTATGAAAGCGGTATTGTTAAAGACAACTCCAAATCATCGGATAATAGCCAAGATAGTAGTCGAAATCatctatttcaaatcaaaatggaaCAAAGTGATAATAGCCAAAGTGAATTTAACGTCCCAGCAAATAAGACGAAGACTCATAAAACGGGAGCTGATAAGGAAGCTATTTGTTTGAGTACAAATGAGCTATTTAGCCGAGAAGGTGATTCGTATATTTGTCAATTGTGTAcggataaaaatttaattatttacgatGGGCGTACCATCGGGATACATTTAAAATCGATACacgatattaaaatttatttatgtgaaaTATGTGGTCATGATTTTCGAAAACGTAGCGAACTAACTGAACATTTGGATGAACACGTCACGGCAACGGAAGATGGGTTTTTCACCTGTGATTTATGTAATAAAGAATTCAACAATTTACGCCTATTTCGTATACATAAACGAATTCATTACACGAATTCAAAGTCGTGGCCATGtacaaaatgtaataaaaagtaTGGTTCAAAAAATTTGCTGGACGAACATATGAATATGCATACAGGTAAGCGGCCTTATAAGTGTGCCCATTGCGATAAAGATTTCGCGTCGAAATATACTCTTTCAGCACATATGAAAATTCATTCCGATCGTCCTCGACCATTTGAATGTCGCACTTGTGGGAAGTCATTCTATAGtggtcaaaatttaatacaacacGAGAAGACGCACACTGGTTTGAGACCGCATGTTTGTGAAGCTTGCGATAAATCTTTTAGTACGCAACATAACTTGGAAGTGCACAAAATTGTACATACCGGCTTTAAACCATTTATTTGTCGTACTTGTGGAAAAGCGTTTGCTCGACGGGCTGAAATTAAGGATCACGAACGCACTCATACTGGTGAAAAACCGTTCAAATGTGATATGTGTATAGCAAGTTTTGCACAACGATCAAATTTACAATCACACAAGAGGGCTACACATTTTGATGATAAGCGATATCAATGTGACATTTGCGATCGTAGGTTTAAAAGACGGCGTTTATTAGATTATCATAAGAAAGCAACACATACCGGTGAACGGCCATTTCAATGTCGTCTTTGTTCAGCCACATTTGTCTATCCCGAACACTACAAAAAACATTTGCGCATACACTCTGGTTTAAAACCTTATTCGTgtgaaatatgtaaaaaaatgtttaacagTCGCGACAATCGGAATGCGCATCGATTTGTGCATAGCGATAAGAAACCGTACGAATGTACAATTTGTGGGGCAGGTTTTATGCGTAAACCATTACTTTTTGCACACATGAAACAAGCTGCTCATTTTTCGGATGCTATCATTATTAACCAACCTCGAGTTCAATCACTTACAACTACGACTAATCCAAAAGATGGTAAAAATGAGGTAGTATTTAAAACGGAAAAGGTCGTTGTTGATAAAGATAATTCGTCTGATATATTTACAGTGCAGGAATACATTGATGAAGGAGACCAAATGGATGGTGCAGAAATAATTGACGACGATCAACATTTAATAGATAATGAAATAGAATCAATACTCCCTGACGATGAGAATGATGGAGATGAACCGGATAACAATGACGAAGATGATATGTCTGAAGATCATATTATTGGTGAAGAGTTATCGGTcgaacaaattttagaaaactcTAATTTTACTACCGAAACGATTCAACCAGGAACAGAAATTTTTATGACCGAAGATGGGCAACTGATCGATGTGGAGCAATGGTGTCGACATTTGCGCCGCATGTATGGGATCGAGAACCAGAACGCGGAGAGAGATGCAGCAGAACAAGTAGTGGGAGCACCAATGGAACGGATAACTATTGATATAGTGGGACCATTTCCAGTGACAACACGAGCAAACAAATTCATCATGGTCGTAATGAACTCTTTTACAAAGTTACCAGACGCTTACACACTATCAAACCAAGAGGCCGCAGCTTTGGTAAATGCACTGTTAACTAGTGGATAA
Protein Sequence
MRNDDGEYAKNQEQNMGIMKIGTCFVCNSGFGAEKNSELNLFKDRTSINDLSPSFILSQILNRPLANDNVHSDSLCQNCFKLCLEFEELEQRLVEIRLEFIRNFNNTAITYNLEPVELEDDEVEDDNIENDHLVEEDECDDDEQVIDEQKDDMLSNPNREEEIETGVMRKISHHQEILEQYEMDNEVEKETRVIILDNLQAPNLIQSDERDDATSYSIDASHFREEYLSEENQSMVEVVAESEDYVHLIEHENQMSTNDENSYESGIVKDNSKSSDNSQDSSRNHLFQIKMEQSDNSQSEFNVPANKTKTHKTGADKEAICLSTNELFSREGDSYICQLCTDKNLIIYDGRTIGIHLKSIHDIKIYLCEICGHDFRKRSELTEHLDEHVTATEDGFFTCDLCNKEFNNLRLFRIHKRIHYTNSKSWPCTKCNKKYGSKNLLDEHMNMHTGKRPYKCAHCDKDFASKYTLSAHMKIHSDRPRPFECRTCGKSFYSGQNLIQHEKTHTGLRPHVCEACDKSFSTQHNLEVHKIVHTGFKPFICRTCGKAFARRAEIKDHERTHTGEKPFKCDMCIASFAQRSNLQSHKRATHFDDKRYQCDICDRRFKRRRLLDYHKKATHTGERPFQCRLCSATFVYPEHYKKHLRIHSGLKPYSCEICKKMFNSRDNRNAHRFVHSDKKPYECTICGAGFMRKPLLFAHMKQAAHFSDAIIINQPRVQSLTTTTNPKDGKNEVVFKTEKVVVDKDNSSDIFTVQEYIDEGDQMDGAEIIDDDQHLIDNEIESILPDDENDGDEPDNNDEDDMSEDHIIGEELSVEQILENSNFTTETIQPGTEIFMTEDGQLIDVEQWCRHLRRMYGIENQNAERDAAEQVVGAPMERITIDIVGPFPVTTRANKFIMVVMNSFTKLPDAYTLSNQEAAALVNALLTSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01458869; iTF_01054605;
90% Identity
-
80% Identity
-