Tlat003625.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963932295.1
- Location
- OZ010736.1:33042639-33044883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.018 16.5 1.0 1 21 68 88 68 89 0.94 2 13 0.018 2.3 9.9 0.1 2 23 132 154 131 154 0.93 3 13 0.016 2 10.1 1.4 1 23 160 182 160 182 0.99 4 13 4e-06 0.00051 21.4 3.3 1 21 188 208 188 209 0.96 5 13 1.4e-06 0.00018 22.8 0.2 2 23 221 242 220 242 0.96 6 13 9.1e-08 1.2e-05 26.6 1.1 1 23 252 274 252 274 0.99 7 13 5.2e-07 6.7e-05 24.2 0.5 1 23 280 302 280 302 0.98 8 13 1.5e-05 0.002 19.6 1.6 1 23 308 330 308 330 0.99 9 13 3.1e-06 0.0004 21.8 3.0 1 23 336 358 336 358 0.96 10 13 0.00035 0.045 15.3 2.3 1 23 364 387 364 387 0.95 11 13 0.0036 0.46 12.1 1.0 2 19 394 411 393 415 0.92 12 13 0.00026 0.034 15.7 0.5 1 23 421 443 421 443 0.99 13 13 3.1e-05 0.0041 18.6 2.7 2 23 450 472 449 472 0.94
Sequence Information
- Coding Sequence
- ATGGATAGCAAAGTGACTAAAgtgaaaattgatgaaaatgaggaaattgaatatattatatcaacAGTAAATACGTCAGATGAAGAGGAAATCGTTGAAGAATATATTATTGATGAGGGGGCCGAAGATGAGGATCCCGAACTGATTGAAACGGCAGATGGGCGAACCCTTATCAAAATGGATCAACAAACTGTTGTCGAACATGTTTGCGGAAAGTGTGCCCAAAGTTTTACAAATCTTCATAATCTTAAGAAACATATTTCAATATGTCGGCTGAAGGATACTCCTGGTCTATCGAAACAGCCCAAATTCTACAACACTTATCCGAAGAAGAGGAAACTGTTGTGCTTCTGTTGTGACGAGGAGAAGATTAAAGCGCATcaAGGTGATATCCCGTGCCCGAAAtgcgatttaaaatttaacacggCACTCGGACGCGAACGACATATATTCTCGTTGCATTcgagtaatatcaattataaatgtaaattatgcaaGGCTTCGTGTCCAACCAAAGGTATACTCGATTTGCATATGCAGACCCATGCACCGACCAAACCATTTGAATGCGACAAATGTGGCCGAGATTTTACACGCAAATACCATCTCGAACGGCATTTAAAGCATACCGCATGTGGTGGCAACGAGCAGGATGTGTTACCGTGTGCTGTGTGTGGCAAAAAATTTACTCGAACGGATAATTTGCGCGAACATTTACGCGGCCATATGGGACAAACGAGTAAAAAACGAGATTTTCAGTGTTCCTATTGTGATAAATCGTTTTATGGATCGTCTCTATTGAATATCCACATTCGTACGCATACTGGTGAGAGACCGTTTCCGTGCGATATATGCCAAAAGCCTTTTTCATCGACTGGGGCGCTTCGTAAACATCGGCGTACCCATACCGGCGAGAAACCCTACAAATGCTCACTGTGTGAAAAATCATTCAGCGCAAAAGAGACCTTCAATCGACACGTTAAAATACATACCGGCGATAGGCCGCACAAGTGCGAGATATGTGGGAAGAGTTTTATACAGGGTTCGCAGCTCAAAGCACACATGTTCCATCATAATGGTGACAATGGTTTTGAATGCAGACTATGCCATCGGGTTTTCAATCGAAAAGCCAGACTGGTCGATCATATGAAGTTTATACACGAGGGTGAGAAACCGATTAAATGCCCGTACTGttcgaaaacatttttaaacgaGAGCGACTTTCGGCGGCACGACAAGGCGCACAAGGGAGTTAAAGaATTCAAGTGTGACGTGTGCCAAAAGGATTTCTTAACCCGGGGCATGCTTATAACACATTTACGCGTTCACACAACCGAAGAGCCATGCGTTTGTGATATATGCAACAAAAGTTTCATTCGATTTGATTGTCTGCTACGTCACATTCGGGCCGTTCATCGTGAAGCCCTATTCGAAGTAATCGTCAAAGAGGAACGGAAACGCTTAAAATTTCTAAACGGTACGGCGGAAATTGCGATCGAGGCTGCGAAAAAAGCAAAGACAGCCGGCTCAACTTCAACCAAGACAGAAGAATCAAAATCAGGCGACGAAGAAATCGAAATCGACGATAGTTATGTCGATTACGAGGATGATGATGAGAACGATGAAGAAATGGAGGAGGAACTAATCCAATTAGAAGATACGACTCACGACACAGACCCGGAAGATGTAAAACCATTGCTAGAGAAAAAACTACCCGAACCGGACGAGATAACATTTATGGACGATGCTACATTGAAACAATCAATATCGCAACTATTAAATTTACTCGTCGACGAGGATACGCTATCGCAATTTGGATGGCCGAAGACAGGAGTTGAGGAAGTACTCAGTTCGGTGATTAAACAGTGCGGCCACAAGCCAGCCGATTACAAGGATTGTGCCGACTATACAACAAAAATGCGCGAAAATACAAAACTTCTATTCACCGTTGTGATTGATGACGATTCGATCAAATCCCTTCTCAACAATCATACAATCGATGAGGTTATACTGCGGGTCCTTAAAATGGCGCAGAATAAGTAA
- Protein Sequence
- MDSKVTKVKIDENEEIEYIISTVNTSDEEEIVEEYIIDEGAEDEDPELIETADGRTLIKMDQQTVVEHVCGKCAQSFTNLHNLKKHISICRLKDTPGLSKQPKFYNTYPKKRKLLCFCCDEEKIKAHQGDIPCPKCDLKFNTALGRERHIFSLHSSNINYKCKLCKASCPTKGILDLHMQTHAPTKPFECDKCGRDFTRKYHLERHLKHTACGGNEQDVLPCAVCGKKFTRTDNLREHLRGHMGQTSKKRDFQCSYCDKSFYGSSLLNIHIRTHTGERPFPCDICQKPFSSTGALRKHRRTHTGEKPYKCSLCEKSFSAKETFNRHVKIHTGDRPHKCEICGKSFIQGSQLKAHMFHHNGDNGFECRLCHRVFNRKARLVDHMKFIHEGEKPIKCPYCSKTFLNESDFRRHDKAHKGVKEFKCDVCQKDFLTRGMLITHLRVHTTEEPCVCDICNKSFIRFDCLLRHIRAVHREALFEVIVKEERKRLKFLNGTAEIAIEAAKKAKTAGSTSTKTEESKSGDEEIEIDDSYVDYEDDDENDEEMEEELIQLEDTTHDTDPEDVKPLLEKKLPEPDEITFMDDATLKQSISQLLNLLVDEDTLSQFGWPKTGVEEVLSSVIKQCGHKPADYKDCADYTTKMRENTKLLFTVVIDDDSIKSLLNNHTIDEVILRVLKMAQNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458850;
- 90% Identity
- -
- 80% Identity
- -