Tlat028396.2
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:98227152-98230566[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.7e-12 3.1e-09 37.5 0.0 1 39 236 275 236 279 0.92 2 4 5.9e-13 6.8e-10 39.6 0.1 2 39 291 328 290 331 0.94 3 4 2.1e-17 2.5e-14 53.8 0.0 1 45 345 390 345 390 0.97 4 4 9.3e-19 1.1e-15 58.2 0.0 1 43 397 440 397 441 0.96
Sequence Information
- Coding Sequence
- ATGACGAGTCTCGGAATGGGAATGGGCATGAATGGGTCCTTGATGGGTGTATCGATGCAGTTTTTAGATTTTGCACCTGAACCACCGGCACCATCGGCGACACCAGTCACTGAACATATTGAATTGACATCAAATCTGCACGACCAGGAGATAAGACGAAAATTTGAAACACTTCGATCACTGGATCCAAGTGATAATTTGGATGTGGATCGTATATCGCAGCATTCAATACATCATTTGACATCGTCGCCGCATCACAGTGAAAACAGTCGGGAGCATTCTCAGCCACTAGACACGATCGTTATAAAACAGGATTTGGACAGGGATTCAGTATCGCAACAGGCCCAAGAACAACAtcaacaacagcaacagcagcaacaacagcagcagcaacaacagcaacaacaacagcaacaacagcagcagtCAGAACAGTCACAATCTCAATCATCACAGCATGGAAATCAGAGTAGTCGGTCTAGTAATATGGACGTGGATCAATCAAGTGGATTGGAACATGAACAATTGCATGGCATGATTATAACACCAGAGATTGTGACTATGATGACTCCTTCTCATATGGACCTCTATCAATCAGATACAAGTgaggaaaataaaatgattttaccTAGTGAAATTAAAGTAGAATATACTGAATTAACCTCTCCTAATGATCCACGGAATGCAGCTGGACCAAAAACATGGACCCCAGATGATATGGAATCAGCCCTCGATGCATTACGAACACATCACATGAGTTTATCTAAAGCTTCCATTACATACGGTATACCTCCCACAACATTATGGCAAAGAGCCCATCGCCTCGGTATAGACACTCCCAAAAAAGAAGGACCAAATAAATCGTGGAACGAAGATTCGTTGAATAGTGCTCTAGATGCTTTACGTACCGGTCAAATATCAGCTAATAAGGCCTCGAAAGCGTACGGCATACCATCATCTACACTATATAAAATTGCAAGACGTGAAGGTATTCGACTCGCCGCACCCTTCAACGCTGCTCCAACAACGTGGACTCAAGAAGATTTAGAGCGTGCATTGGAGGCAATTCGTAGTGGTCAAGCATCGGTACAAAAAGCAAGTGTAGAATTTGGTATACCAACAGgAACGTTGTATGGAAGATGTAAACGAGAAGGTATAGAATTATCGAGGTCAAATCCTACACCGTGGTCTGAAGATGCTATGATGGAAGCTTTAGAAGCTGTTCgTATTGGTCAAATGTCAATAAATCAGGCTGCTATACATTATAATCTTCCATATAGTTCACTCTACGGCCGATTTAAACGTGGAAAATATGATACAAACTCTGGTGATGGTCATATGATCGATACAAGTCCGGAAAATACAtaTAATAACGTATTTCAGCAACAGTACAGCCCTGTCATGTTAGCACATCAGCCCCAAACCCCACAGCCACATCAATcccaacaacagcagcagcagcaacaacaacaacaacagcagcagcagttGCAACAACAGATCCCACAGTTAATAGTGCAGCAGCAACAATCACAGAATTCGAATAGTCAACCGGAGTTATATCTTATAACACCCAAACAAGAAAGAAGTTGA
- Protein Sequence
- MTSLGMGMGMNGSLMGVSMQFLDFAPEPPAPSATPVTEHIELTSNLHDQEIRRKFETLRSLDPSDNLDVDRISQHSIHHLTSSPHHSENSREHSQPLDTIVIKQDLDRDSVSQQAQEQHQQQQQQQQQQQQQQQQQQQQQQQSEQSQSQSSQHGNQSSRSSNMDVDQSSGLEHEQLHGMIITPEIVTMMTPSHMDLYQSDTSEENKMILPSEIKVEYTELTSPNDPRNAAGPKTWTPDDMESALDALRTHHMSLSKASITYGIPPTTLWQRAHRLGIDTPKKEGPNKSWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQEDLERALEAIRSGQASVQKASVEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDTNSGDGHMIDTSPENTYNNVFQQQYSPVMLAHQPQTPQPHQSQQQQQQQQQQQQQQQLQQQIPQLIVQQQQSQNSNSQPELYLITPKQERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054218;
- 90% Identity
- iTF_01054218;
- 80% Identity
- -