Ngue052463.1
Basic Information
- Insect
- Nephrotoma guestfalica
- Gene Symbol
- -
- Assembly
- GCA_963691935.1
- Location
- OY829915.1:150700532-150711666[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-12 5.5e-09 37.4 0.0 1 39 246 285 246 289 0.92 2 4 9.2e-13 1.2e-09 39.5 0.1 2 39 301 338 300 341 0.94 3 4 3.3e-17 4.4e-14 53.8 0.0 1 45 355 400 355 400 0.97 4 4 1.5e-18 2e-15 58.0 0.1 1 43 407 450 407 451 0.96
Sequence Information
- Coding Sequence
- ATGACGAGTCTCGGAATGGGAATGGGCATGaaTGGGTCCTTGATGGGTGTATCGATGCAGTTTTTAGATTTTGCACCTGAACCACCGGCACCATCGGCGACGCCAGTCACTGAGCATATTGAGCTGACTGCAAATCTGCACGACCAAGAGATCAGACGGAAATTTGAAACGCTTCGTTCACTGGATCCTAGTGATAACTTGGATGTGGACCGTATATCACAACATTCAATACATCATTTAACATCGTCGCCGCATCATAGTGAAAATAGTCGGGAGCATTCTCAACCACTAGATACTATTGTCATAAAACAGGATTTGGATAGAGATTCTACATCACAGCAGGCCCAAGAACAACTCcagcaacagcagcagcagcaacaacagcaacaacagcaacaacaacaacaacaacagcagcaacaacagcagcagcagcagcaacaacaacagcagtcAGAACAATCACAATCTCAATCATCACAGCATGGAAATCAGAGTAGTCGGTCTAGTAATATGGACGTGGATCAATCTAGTGGATTGGAACATGAACAATTACATGGCATGATTATTACACCCGAGATTGTGACTATGATGACGCCTTCGCATATggataTCTATCAGTCAGATACAAGTGAggaaactaaattgattttaccTAGTGAAATTAAAGTAGAATATACTGAATTAACCTCTCCTACTAATGATCCACGGAATGCAGCTGGACCGAAGACGTGGACCCCAGATGACATGGAATCCGCCCTCGATGCACTACGAACACATCACATGAGTTTATCAAAAGCTTCCATTACATACGGTATACCTCCCACAACATTATGGCAAAGAGCTCATCGTCTCGGTATAGACACCCCAAAAAAAGAAGGACCAAATAAATCTTGGAATGAAGATTCATTAAATAGTGCTCTTGATGCTTTACGAACGGGCCAGATATCAGCGAATAAGGCCTCAAAAGCGTACGGCATACCATCGTCGACGCTCTATAAAATTGCAAGACGTGAGGGAATTCGGCTTGCCGCACCATTTAATGCTGCACCCACAACTTGGACGCAAGAAGATTTAGAGCGTGCTTTAGAGGCAATTCGTAGTGGCCAAGCATCGGTGCAGAAAGCGAGTGTCGAATTCGGTATACCAACTGgAACGTTGTATGGAAGATGTAAAAGGGAAGGCATAGAATTATCGAGGTCTAATCCTACACCGTGGTCTGAAGATGCTATGATGGAGGCTTTAGAAGCTGTTCGaattggaCAAATGTCAATAAATCAGGCCGCTATACATTACAATCTTCCATATAGTTCGCTGTACGGCCGATTTAAACGCGGAAAATACGACACAACTTCTGGTGATGGACACATGATTGATACAAGCCCCGAAAATACACAACAGTATAGCCCTGTCATGATAGCACATCAACCCCAAACTCCACAGCCACATCAATcccaacagcagcagcagcagcagcaacaacaacaacaacagcagcaacagcagcagcagcagcaacaacagcaacagcaacaacaacaacagataCCACAATTAATAGTGCAGCAATCACAAAATTCGAATAGTCAACCGGAGTTATATCTAATAACACCAAAACAGGAACgaagttga
- Protein Sequence
- MTSLGMGMGMNGSLMGVSMQFLDFAPEPPAPSATPVTEHIELTANLHDQEIRRKFETLRSLDPSDNLDVDRISQHSIHHLTSSPHHSENSREHSQPLDTIVIKQDLDRDSTSQQAQEQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSEQSQSQSSQHGNQSSRSSNMDVDQSSGLEHEQLHGMIITPEIVTMMTPSHMDIYQSDTSEETKLILPSEIKVEYTELTSPTNDPRNAAGPKTWTPDDMESALDALRTHHMSLSKASITYGIPPTTLWQRAHRLGIDTPKKEGPNKSWNEDSLNSALDALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTQEDLERALEAIRSGQASVQKASVEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRGKYDTTSGDGHMIDTSPENTQQYSPVMIAHQPQTPQPHQSQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQIPQLIVQQSQNSNSQPELYLITPKQERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457245;
- 90% Identity
- iTF_01457245;
- 80% Identity
- -