Thel120525.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- -
- Assembly
- GCA_963556165.1
- Location
- OY744483.1:308048389-308049793[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 7.6e-06 0.35 13.9 0.0 21 46 231 256 229 264 0.89 2 7 0.14 6.5e+03 0.2 0.0 26 44 272 290 267 296 0.86 3 7 0.0021 99 6.0 0.2 21 46 295 320 281 326 0.84 4 7 0.0035 1.6e+02 5.3 0.2 22 52 324 354 319 355 0.88 5 7 0.01 4.6e+02 3.9 0.1 23 45 353 375 347 378 0.87 6 7 0.00059 27 7.8 0.3 21 49 379 407 371 412 0.86 7 7 0.073 3.4e+03 1.1 0.3 16 48 403 435 402 438 0.87
Sequence Information
- Coding Sequence
- ATGGCTTACGACTTTCGTAAACAGGCCGAGTATTCAGATAAATGTTTAAGACAGTTCATAACACATAAGGAAGAACTGAACCAATCGGCACAGGGGAAACAGGGTCTGTACGatgaaaagattttaaaaattcatcgtACGAGGATGAAAGCAGAGCCAGATGATCAAATCGAGCAGCTGATCGATTTTAGATCAGAAGAGGTTTCGACCGTAAAATTGCTACCCACATTAGAAGAAGACATTAACTGTAAGGGAACTGAACGACTGACTGATAGCGTTCCTGTGTACGCAGAGATTGAAGAGGCCAACATTGAAAAAATACAAGAgactaaacaaataaatttattcacaatagcGAAAGTTACTTCTATTCCTAAAACTGAATTCAACCAAACAAATGAGATTACTGGAAACGAGAGTTGTTTGCAAGAAGACATTGAACGAGTATCTGGTGATACGCAGATCAAAGTAGAGCAAATCGATCAAATGAAGCAGCCGACCGATGTGAAATCGGTAAAGATTTCAGAGGCAGTAGAAGAGGGCATTCAATATGAGGGAAGCACATGTGGAGCCGATAtagcaaaaactgaaaaatttcaaGATTCACAATACACAATAGCGAAAGTTACTTCTTTTCATAAGAATGAGGACGACCAAACTGGTAATGTTTCATTTCCCATAATTCATACGGGAGAAAAACCTTTTACTTGCACTGTATGCGATGCCCATTTCACAAGAAACGGAAATCTCAAGCGGCATTTACTAATCCATTCAGGTGAGCGACCATCCGAGACATTTCATAAGATACGTTACACTTGCATCGTATGCGGTGAACATTTCACACAAAAAGGATCACTCAAGCGTCATTCACTAGTCCATTCGGCTGAGCGACCGTACAAGTGTAAAATTTGTGGCCAATCTTTTACTCAGAGCAATGCGCTAACAGCCCATTTTCGAATTCATTCGGGCGACCGGCCATTCAAGTGTAAGATTTGTGGCCAAGCCTTTACTCAGAGTAATTGCCTAGCATCCCATATGGCAAAACATACGGAAGCAAAACCTTACAAATGCGTTGTATGCGATACCATTTTCAAGCGAAAAGAATCACTCAAGCGGCATTCACAAATCCATTCAGGTGAGCGACCATACAAATGTGATTTGTGTGGGCGAGGCTTTAATCAGAGCAATAACCTAGTATCGCATAAGAGGCGACGACATACGGGAGGAAAACCTTACCATTGCGAAACTTGTGGCTTGCATTTCAAATACAAGAAAGCTTTAACGCGGCACGTTTTCATCAAGCACGAAAaccaaaaagtaattttcaacaaataa
- Protein Sequence
- MAYDFRKQAEYSDKCLRQFITHKEELNQSAQGKQGLYDEKILKIHRTRMKAEPDDQIEQLIDFRSEEVSTVKLLPTLEEDINCKGTERLTDSVPVYAEIEEANIEKIQETKQINLFTIAKVTSIPKTEFNQTNEITGNESCLQEDIERVSGDTQIKVEQIDQMKQPTDVKSVKISEAVEEGIQYEGSTCGADIAKTEKFQDSQYTIAKVTSFHKNEDDQTGNVSFPIIHTGEKPFTCTVCDAHFTRNGNLKRHLLIHSGERPSETFHKIRYTCIVCGEHFTQKGSLKRHSLVHSAERPYKCKICGQSFTQSNALTAHFRIHSGDRPFKCKICGQAFTQSNCLASHMAKHTEAKPYKCVVCDTIFKRKESLKRHSQIHSGERPYKCDLCGRGFNQSNNLVSHKRRRHTGGKPYHCETCGLHFKYKKALTRHVFIKHENQKVIFNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01456722;
- 90% Identity
- iTF_01456722;
- 80% Identity
- iTF_01456722;