Thel093475.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- Unr
- Assembly
- GCA_963556165.1
- Location
- OY744483.1:64497375-64515593[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.4e-16 8.4e-12 47.6 0.0 2 65 179 241 178 242 0.95 2 9 0.00011 3.7 10.3 0.0 16 58 275 317 268 325 0.78 3 9 1.9e-17 6.7e-13 51.1 0.1 2 65 335 394 334 395 0.96 4 9 0.66 2.3e+04 -1.8 0.0 40 54 459 475 451 486 0.71 5 9 1.5e-10 5.1e-06 29.1 0.0 2 54 500 549 499 555 0.94 6 9 0.03 1.1e+03 2.5 0.0 43 65 630 654 628 655 0.89 7 9 5.9e-15 2e-10 43.2 0.0 2 57 712 764 711 773 0.92 8 9 0.01 3.6e+02 4.0 0.0 33 63 837 865 828 868 0.78 9 9 6e-16 2.1e-11 46.4 0.5 3 65 871 935 869 936 0.90
Sequence Information
- Coding Sequence
- atgatgTCAAATATTCAAACGCATAATTCATCGTATTTGACagcaaataatttgaattatttacaaacagcaaatgatttaataccaaatttaaatacaatttcgTTGAATTGTAATGATTTatcgcaacaacaacaacagcagcagcagcaacaacaacaacagcaaggATTAAGTGGTGATAGTGTTGTAACATCGGCATCAACTAAAATTCAGTTAtctaatttttggaaaagtttTCAACAACAGCAGCAACAACAGGATAATAATACATCAAcaccaattttaaataagacTAATTTTTTACTATCCGGATCATCTCAATTGAATAGTAACAATCAAGGTGGTGGAATCggaggtggtggtggtggtggtggaggagGAGGAGGAGGAGGAGGCGGTGGTGGTGGAGGGGGTGGaattataacaaataattcGTATAATTTACTAGACTATCCATTGCATACGAGTGGAACAACAACGgGATACAATGGCAACAATAATACCAGTGGTGATAATCAAGGAACCCGAGAGACTGGAATTATAGAAAAGTTATTGCATTCGTATGGTTTTATACAATGCTGTGAACGACAGGCtcgattattttttcatttttcccaaTTCAGCGGAAATATTGAGCATCTAAAGATTGGGGATCCGGTTGAATTTGAAATGACATATGATCGACGTACCGGAAAACCAATTGCTAGTCAAGTAACAAAAATTGCACCTGAAGTTGTACTATCGGAGGAACGTGTTACCGGTACCGTAACCACTGAGATTAAATGTGAAACAAGTAATTCATCGGGTGAAAATACTGGTCGGATTAGCTATGAGAATCGTGGCGAATGTTTTTTTCTACCCTATACTAAGGATGATGTTGAAGGAAATGTTTCGTTACGTGCTGGCGATAAAGTAAGCTTTCAAATTGCAACAAATCAACGTGGAAATTTGGGTGCTTGCCATATTCGGCTTGAAAATCCAGTACACCCAGTAAAATATCGTGGTGTCGTGTGCTCAATGAAAGAATCGTTTGGTTTTATTGAACGGGCCGATGTTgtcaaagaaatatttttccatttttcagaGGCTGATGTAAGCGTTGAATTGAGACCTGGAGatgatgttgaatttattattcagaCAAGAAAtggTAAAGAAGTTGCTTGTAATATTATACGATTAGCACCTGGCTCCGTTATATTCGAAGATGTTGGAACAACTGTGTTTAAGGGTCAAGTATTGAAACCGCTCGACCGTAACAATCCGCAACGTCATAACAATGATCCATTACCCGGCCGTATTCGTTATCGTGCTCCCGATCACTCTGAAGTTGAAGTGCCTTTTGGTGATAAGGATCAGAAAGGTGATTTTACATTGCGTCACGGGGATTGGGTACAATTTTTGTTGGCCACCGATCGTCGAGACCAATTGCAACGGGCTACATCTATTTCATTGCTTGAAGAAACGTTTGATGTATCGGGTGAGAAACGTGAACAAGGTGTAATTGCTGCGTTAAAAGAAGGTTATGGATTTTTACGCTGCGTTGAACGTAATACtcgattattttttcatttcactGAAGTTTTGGATACGgCACGTGAAATTTATGTAGGTGATGAATGCGAATTTACTGTAATCCAAGATCCAACATCCAGTTTTTCAAATACTAGATTTAGTGCCATTAGAATTAAACATTTGACACCTGGTACTGTACAGTTTGAAACCTTGGTTGAGAGTAATGTTGAAGGTGTAATTACACGTGAGGCGCCAAAGAGTCCAACAAAATCTCTTGATCGTACAGAAGGTGGTGTTATTTCATATAATGAGGGTAATGTTAAAAAGACTATAATGTATTTCCTTAAAGACTGTGAAAAACCACCGCGCTCTGGCGATAttgttaaattcaatatttgccAGGTTAAACGAAACAAAGAATTAATCGCAATTAATGTACAAGAAATATCAAATAATATACAATCATCCCAAAATGAAAATGGGCAATacaatagtaatagtaatattagtatcattaataataataataattcaacatcATCAGGTAATCAACGAAAATATTCTGAATCCAGTAACAAGTCTAACGATGGtggtaatacaaaaaataatctttatcAAGGATACATTGCCGTATTGAAGgataattttggttttatagaAACGTTAAATCACGAAGAAGAAGTATTCtttcattttagtaattttgtaGGAAATCCGAATTCATTGGAATTGGGACAAGAAgttgaatataatttatcatCACGTTCAAATAACTCATCTTGTGGTAATTGTCTTCCAGCTGAAAACGTAAAAGTTTTATCGAAAGGAACCATATATCAGCCAAtaatttatgatgaaatttacaaTGGAAACATAATGAGACCACTGCGATGCGTAAATCCGGATCAAGTCGAATACTGTGGTGTTGTACAAATGTTTGATAATAGTGGACAAACAACAACCGTACACGATTTTGGTATCACAAGTTTGATAAATAAACGTGATTTGTTACAGAAAAATGATAATGTAACATTTAAATTGGATGAGAATGGTCGTGCGACTGAGATTGTTGCTGTGCGCAAGAAAAGCCGTGCTAGCGTTGACTCAATAAATAACAAAGGACAATTCGGTTTTCTTGACTACGAGATTGAGGAGggtaaaaaattattctttcatATGTCAGAAGTTCAAGGCAATGGGAATAATTTACACAGCGGCGATACAGTTGAATTTTCAATTGTAACAAATCAACGAAGTGGCAAATCATCTGCCTGTAATGTTGCCAAAATATCTGATGGTAATCGACCAGAACGTATGTTATCACGGATCAAAGTAAATTCGGTTGAAGAATTTGGTCCAAAAATTACAGTAGTTCGTCAACCAAAAGGACCAGATGGTACTAAAGGATTTTCTTCTTTGTTACGCTCTAATAGATTTCCAGGTGTCTATGTGGAAAACTAG
- Protein Sequence
- MMSNIQTHNSSYLTANNLNYLQTANDLIPNLNTISLNCNDLSQQQQQQQQQQQQQQGLSGDSVVTSASTKIQLSNFWKSFQQQQQQQDNNTSTPILNKTNFLLSGSSQLNSNNQGGGIGGGGGGGGGGGGGGGGGGGGGGIITNNSYNLLDYPLHTSGTTTGYNGNNNTSGDNQGTRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIEHLKIGDPVEFEMTYDRRTGKPIASQVTKIAPEVVLSEERVTGTVTTEIKCETSNSSGENTGRISYENRGECFFLPYTKDDVEGNVSLRAGDKVSFQIATNQRGNLGACHIRLENPVHPVKYRGVVCSMKESFGFIERADVVKEIFFHFSEADVSVELRPGDDVEFIIQTRNGKEVACNIIRLAPGSVIFEDVGTTVFKGQVLKPLDRNNPQRHNNDPLPGRIRYRAPDHSEVEVPFGDKDQKGDFTLRHGDWVQFLLATDRRDQLQRATSISLLEETFDVSGEKREQGVIAALKEGYGFLRCVERNTRLFFHFTEVLDTAREIYVGDECEFTVIQDPTSSFSNTRFSAIRIKHLTPGTVQFETLVESNVEGVITREAPKSPTKSLDRTEGGVISYNEGNVKKTIMYFLKDCEKPPRSGDIVKFNICQVKRNKELIAINVQEISNNIQSSQNENGQYNSNSNISIINNNNNSTSSGNQRKYSESSNKSNDGGNTKNNLYQGYIAVLKDNFGFIETLNHEEEVFFHFSNFVGNPNSLELGQEVEYNLSSRSNNSSCGNCLPAENVKVLSKGTIYQPIIYDEIYNGNIMRPLRCVNPDQVEYCGVVQMFDNSGQTTTVHDFGITSLINKRDLLQKNDNVTFKLDENGRATEIVAVRKKSRASVDSINNKGQFGFLDYEIEEGKKLFFHMSEVQGNGNNLHSGDTVEFSIVTNQRSGKSSACNVAKISDGNRPERMLSRIKVNSVEEFGPKITVVRQPKGPDGTKGFSSLLRSNRFPGVYVEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -