Basic Information

Insect: Tipula confusa
Gene Symbol: -
Assembly: GCA_963556175.1
Location: OY744477.1:145001746-145006008[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0088 1.4e+02 4.1 0.0 21 46 6 31 3 37 0.78

2 15 0.014 2.2e+02 3.4 0.1 21 46 34 59 30 62 0.89

3 15 0.0074 1.1e+02 4.3 0.0 22 52 63 93 60 95 0.85

4 15 0.017 2.7e+02 3.1 0.1 21 46 90 115 88 122 0.91

5 15 0.25 3.8e+03 -0.6 0.0 23 52 120 149 114 151 0.79

6 15 0.062 9.6e+02 1.3 0.0 23 51 148 176 138 177 0.86

7 15 5.3e-06 0.082 14.4 0.0 22 48 175 201 169 205 0.87

8 15 0.0021 32 6.1 0.0 22 46 231 255 226 263 0.88

9 15 0.014 2.1e+02 3.4 0.1 26 47 263 284 255 289 0.81

10 15 0.017 2.6e+02 3.2 0.0 21 52 286 317 282 318 0.86

11 15 0.015 2.2e+02 3.4 0.1 21 47 314 340 310 346 0.85

12 15 0.012 1.9e+02 3.6 0.2 21 51 342 372 337 375 0.86

13 15 0.033 5.2e+02 2.2 0.5 21 52 370 401 356 403 0.83

14 15 0.011 1.7e+02 3.8 0.1 21 47 398 424 392 429 0.85

15 15 0.012 1.8e+02 3.7 0.2 21 46 426 451 421 454 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0088	1.4e+02	4.1	0.0	21	46	6	31	3	37	0.78
2	15	0.014	2.2e+02	3.4	0.1	21	46	34	59	30	62	0.89
3	15	0.0074	1.1e+02	4.3	0.0	22	52	63	93	60	95	0.85
4	15	0.017	2.7e+02	3.1	0.1	21	46	90	115	88	122	0.91
5	15	0.25	3.8e+03	-0.6	0.0	23	52	120	149	114	151	0.79
6	15	0.062	9.6e+02	1.3	0.0	23	51	148	176	138	177	0.86
7	15	5.3e-06	0.082	14.4	0.0	22	48	175	201	169	205	0.87
8	15	0.0021	32	6.1	0.0	22	46	231	255	226	263	0.88
9	15	0.014	2.1e+02	3.4	0.1	26	47	263	284	255	289	0.81
10	15	0.017	2.6e+02	3.2	0.0	21	52	286	317	282	318	0.86
11	15	0.015	2.2e+02	3.4	0.1	21	47	314	340	310	346	0.85
12	15	0.012	1.9e+02	3.6	0.2	21	51	342	372	337	375	0.86
13	15	0.033	5.2e+02	2.2	0.5	21	52	370	401	356	403	0.83
14	15	0.011	1.7e+02	3.8	0.1	21	47	398	424	392	429	0.85
15	15	0.012	1.8e+02	3.7	0.2	21	46	426	451	421	454	0.89

Sequence Information

Coding Sequence: ATGAAAGTTCATTCCGGTGAAAAACCATTTACGTGTGAAGTTTGCACAAAATCATTTCGATTAAAATCACATTTAGATgtTCATATGAGAATACATACTGGGGAGAAACCGTTTAAATGTGAAATATGTTCAAAAGAATTTCGTGTTAGTGCTCCTCTACAAATCCATATGAAAATACATACCGGCGAAAAATCGTATACGTGTGAAGTATGTTTTAAACCGTTTCGAGAAAAATCTCATTTACAGGATCATATACGAATTCATACTGGGGAGAAACCATTTATTTGTGAACTATGCTCAAAACCGTTTCGTGTAAAAGCTCATTTACAGAGGCACATGAAAGTGCATTCAGAAGAAAATGGTTATAAATGTGAGGTGTGTGGCAATATATTCCGGGATGGTTATCAACTGGAGgtgcataaaaatattcataccggtgtaaaaccatttaaatgtgAGATTTGTTCAAAAGATTTTCGAGGAAATTCTCATTTACAGAATCATATGAGAATGCATCGTGAGGATAAACCACTTACTTGTGAAATTTGTTACAAAGGTTTTCGTGAAAAAGCCAATTTACAgGTTCATATGAAAGTGCACACGGTAgccaattattataaatgtgaAATGTGTCCACAAATATTCTATCAATTTATCGATCTACAAGTGCACATGAAACAACATCCGCCAGATAATCCATTCCAGTGTATAATTTGTTTCAAAGAATTTAATGTAAAAGCCAATTTACAgAGACACATGAAAATCCACACCGAAGATAAATCATTTGTCTGCGAAATTTGCTATAAAGAATTCCGCGAAAATGCAACATTACTGGCCCACATGCGAATACATACTGGCGAAAAACCATTTCAGTGTGGTGTTTGCGCCAAAGAATTTCGCGGCCAATCAGCTTTGCATAAACATATGAAAATACATACAGGTGAAAAACCATACCAATGCGATGTGTGCGACAAACATTTCCGTGAGGCTGTACACTTGAGGGTGCATAAACGAATTCATACCGGTGAAAAACCATACAAATGCGAAGTATGCCATAAGGAATTTCGATGTAGTGGCACAATGCAGTACCATATGCGAATACATACGGGCGAGAAACCATATAGTTGCGGCGTTTGCTCAAAACCATTTAGGGAGAGAGGACATTTACAAGTTCATATGCGAATTCATACACAAGAGAAACCATATCCTTGCGTCGACTGTACAAAAACATTTCGTGATTCAGGACAATTGAGTCGTCACAAGAAAATTCATTCGGGCGAAAAACCTTACAACTGTATAATTTGTTCAAAACAATTCCgcgaaaaatgtcatttaaagGCCCACATGAATATACATgtggttgatgaaaatttagGACGTGAAATATCGAACGCCATATACAATCATTCGGACGAACTAATTTTGGTTAGCCACTATCAGCAAAATTTCAATTCAGATGGAAACTTGCCACAACTTAATGTGCATATAAAATGTGAACCGAACACAGATGAATTAGCCATAATTGAGCCCACCGATCATCTAAGACTGTCAATGTTTAAAGATGAACCAGACTATGAGTTggaacaattataa
Protein Sequence: MKVHSGEKPFTCEVCTKSFRLKSHLDVHMRIHTGEKPFKCEICSKEFRVSAPLQIHMKIHTGEKSYTCEVCFKPFREKSHLQDHIRIHTGEKPFICELCSKPFRVKAHLQRHMKVHSEENGYKCEVCGNIFRDGYQLEVHKNIHTGVKPFKCEICSKDFRGNSHLQNHMRMHREDKPLTCEICYKGFREKANLQVHMKVHTVANYYKCEMCPQIFYQFIDLQVHMKQHPPDNPFQCIICFKEFNVKANLQRHMKIHTEDKSFVCEICYKEFRENATLLAHMRIHTGEKPFQCGVCAKEFRGQSALHKHMKIHTGEKPYQCDVCDKHFREAVHLRVHKRIHTGEKPYKCEVCHKEFRCSGTMQYHMRIHTGEKPYSCGVCSKPFRERGHLQVHMRIHTQEKPYPCVDCTKTFRDSGQLSRHKKIHSGEKPYNCIICSKQFREKCHLKAHMNIHVVDENLGREISNAIYNHSDELILVSHYQQNFNSDGNLPQLNVHIKCEPNTDELAIIEPTDHLRLSMFKDEPDYELEQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01457738;
90% Identity: iTF_01455051;
80% Identity: iTF_01455051;