Tcon028501.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula confusa
Gene Symbol
-
Assembly
GCA_963556175.1
Location
OY744476.1:211487911-211499122[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.006 0.9 11.4 0.7 1 23 248 270 248 270 0.97
2 19 0.0002 0.03 16.1 2.8 2 23 277 299 276 299 0.96
3 19 5.5 8.2e+02 2.1 2.0 1 23 350 372 350 372 0.97
4 19 6.5e-06 0.00098 20.8 2.6 2 23 379 401 378 401 0.96
5 19 6.8e-05 0.01 17.6 0.5 2 23 468 490 467 490 0.96
6 19 2.1 3.1e+02 3.4 0.1 2 13 1225 1236 1224 1238 0.85
7 19 0.076 11 8.0 0.2 1 23 1452 1474 1452 1474 0.91
8 19 9.8 1.5e+03 1.3 3.4 1 23 1480 1506 1480 1506 0.85
9 19 0.00022 0.033 16.0 3.3 2 23 1513 1534 1512 1534 0.98
10 19 0.001 0.16 13.8 7.7 1 23 1540 1562 1540 1562 0.98
11 19 1.4e-05 0.0021 19.7 0.5 1 23 1568 1590 1568 1590 0.98
12 19 4.4e-05 0.0065 18.2 0.8 1 23 1596 1618 1596 1618 0.98
13 19 0.0018 0.27 13.1 2.5 1 23 1624 1647 1624 1647 0.97
14 19 0.11 16 7.5 3.9 3 23 1674 1694 1673 1694 0.98
15 19 0.0016 0.24 13.2 2.4 1 23 1698 1721 1698 1721 0.97
16 19 0.027 4 9.4 2.2 1 23 1727 1750 1727 1750 0.96
17 19 1.7e-06 0.00025 22.6 0.6 1 23 1757 1779 1757 1779 0.99
18 19 2.7e-05 0.004 18.8 0.9 1 23 1785 1807 1785 1807 0.97
19 19 0.1 15 7.5 0.1 1 23 1813 1835 1813 1835 0.98

Sequence Information

Coding Sequence
ATGTATCCTCCAAACTGGGTTGATAATCAATATCCTACTAATAATATGCCAAGGAATCCGTATTCATCTAAAGGATATATGTGGCAATCATCTGAACCACCATCTTTGATAGAACCTTTAGAATATGTCTATCGTAATCCTCTTCCGTATACCACGCCAGATGAAAATCGGTATCACGATGTTTGGACCGATCCCAATATGGAACAACAGATTGTTGTCGAATCGTTTAAAACTCAAACTAACTACCAAGTAAATCGGGAACGTACAAAAATTCGGATTCTACCCGAAGTTAAACCAAAGTGGAAATACATGGATATTGCTGATAAATATCGTGAAAATACGACCATTCGACGTAATAGTAATTATAGCTATAGTCAAAATCATTACCAATCATCATTGAATCCATTAAATTCTTCGGTTCATTCAAAAGTcattaacacaaataaaaaatgtcgtgGATGTTTAAAATCAGACAAAACTTTTGAATACGATGTTGATCAACAACAGTATTTTACATcgattaaagTCAAACCTGATTTTACAAATTCGGCTGGCTTATGCTTTAACTGTGCCGAAGAGCTTAAGCTAGCttataattttcgtaaaaaatgtttgaaagcaAATAAAGACTATAAAACCTTATTAAGCATTAAAGATGTACCCATGTATGaaacaccaaaaccaaaatatcaaaatcatcaTCAATCAATGATGGAGTATGATAAATCAAGGATTGGACCGTTCGAGTGTAATCTTTGTGGCAAAATCGTTCGAACGTATAAGGgatggaaaaatcataaaattaagcATGGTGCCGATTTGAATATAATGTGCGAAGAGTGCGGCAAAAGTTTTATGCACGAAAGTAAATTGCATATGCACATCAAAAAAGAACATTCGATCAAACGTTTTGAAATGTTTGGCCGTGACTATATGTCGATGAACATTCAAAACGAGTATGGTGTGTTTGAAGATcgtgaaaatatatttctaaaatcaTTATTTCCCGGTTCGATTGTACCGTATAATACAAACGCGGTTGGACGTTTCGAATGTGAAATATGTTGCAAAGtgatcaaatcaatcaaaacaatGGAGCTACATCGGCAAAAACATATTCGAGAATTGGATTTGATGTGTGATGAGTGCGGTAAGTGTTTTACTAATGagcgtaaattaaatttgcatataAGGACAAAGCATCCGAAATACGATGAAAATAGTATGGAGTATATGAATAAGGATATCTGGATATTTAAATCGACCTATTCTGCTGATTcaacaatattacaaaaacgTCCCTACATGGGACCATTCGAATGTGATTTATGCTGTAAACTAAGTAAAACAAGGCAAGATATGGAGTACCATAATCAGCGACATATGAAACAATTGGATTTGGTATGCGAAGAGTGTGGCAAAGGTTTTTCGTACAAAGAAAAGTTAGAATTGCACAAGAAAATGAAACATTCACGGTATCAGCAAGATGTGGATGGGTACGGCTATGACGGAACTGgatatggaaaatataaaacagGAAATCACggtaaaaagaaatttaagctTGAAGATCGCATGGAATCTGTCGACTATGGGACCAACGAATATCGATGGGATGATAAAATTCAGGCAAATAATTTTGCCGCCCAAGAATATAATAATTGGGAGGCCAAATTAGAGACCAGTGATTATGATACATCGGAATTCGCTAACAAATGGGATgataaaatacaagctagcagtAACTACATGATAAACGATTATAAGTATGCGGATCCAATACCAATGAATTCGTATAATACACATCATCAAGCAGCGACAATGCCCACCATGAGCACAATGAGTTCATTATCCAATATGAACAGTTACACAAATTTCCAACCAACACCGCAACCAGCTGTTATCGTACCAAACAtaatcaaacaaaaagaaaCATATCCGGCAGTTGTTGCCCCAAAAAATGAGCTCAAGTGGacagacaaattaaaatcgtttaCCGATAAGAATGTTCTCAGTTGGCAAGATAAGTTTAAATCGAATCCGTTTAGCAAGGCCGATTTTAAGcttgatgaaaaattaaaaccgtataTCGGATGCGGTAATAGTACCGCAACGACAATTCCGgttaacaataacaacaacaatatcaatAATAACGCAATTAAATCTCAATACACTGATGCGGTACCAATcatgtacaacaacaatagtATTCCAGTAGCTGGTCAACAACAGTATGGTTACAATAACGGAATGAACGTCATGAACACAATGAAACCGACGTACACAAACGATTCTATAAGCACATATAATTCTTATGGGAAAGAACCATTAAAGCCACTCAACCAATATAACTATCAAGATCCAGTAGTTAAACCTACGCCCCAGTACATTTATCAAGAACCTATACAATCAGTCAACCAGTACAATTATCAAGAACCAGTTAAACCGATTAATCAGTATAATTATCCGGAACCTGTAAAACCAATCGCTCAATCGGCATACAACTACCAAGATCAAGTTAAACCAAATCAAACTGCCTATAGTTATCCGGAACCAGTTAAGCCGACGACAACTGCGTATAATTATCAAGAACCGGTTAAATCGACAGTGGGATATAATTATCAAGACCCGATTATTACAAAGCCAGCTAACCAGTACAATTATCAAGAACCGGTCAAACCATATCCAAACGTTAATGTTACCAACGAGTACAATGTTACGAACGAGTTTAAATACGATGATCAAACGGTCCCCTATAACGATAATGCACatcatgacgatgatgatgacgatgattatAATTACGATGATGAAGGTAATTCGTACAATGATGACGACGATAACGACGATGAATACTATAATAATGAAGATACAAATGTTACGTCATACACGGACGTGAACGCCAAGTATAATTATGAGGAAACAATGAAATCGTACATGGCAGATGCGAACGAATATAAATtcgatgataaaaataaaattgagccGATTGCTAAAGCAATCGAACCGATCATTAAAATTGAGGAACCGAAAAAAATTGTGGAACCAGTAATTGTTCCACCAGCTGTAATCATTACGAATGGCGCTAAAATGCAGACACAAGATTCATACGAGGTTCATGATTACAATATTGAGGAACATCTTGAACCGTTTCCCGAAGAAGATGACGAATATAATtacgatgatgatgaagaaaTTTCGAAACCGGATACATACGATCATGATGACGACTACGATGACAAAAACGAATCGTACCCGACCGAAGATGATCATTACGATGACGATGATCATATCGATATGTCGGAACATGCAATGAAAGTTGATGTGCCAATTGTCGAACCAAAAacgaatgatataaaaaaattggatgttAAAATATCGCCAAAAGCgagtgaaataaaaatgattgcgGAGGAGGTGAAAATTGATAAagaaaatgttgttaaaataacGGATCCGATTAAAGAGGAACATAAATTGGAATCagattcaaatttaaacgaTCATGATCTTAAAGAGGATGATAAATTGGAATCGTACGAAGAAGGGCAAGACGATAAGTTCGAGGAAGATGTGGTATCGTTTACCGAAGAGAAAAATGAGTACGACGAGGAGGATCAAATGAATCAAGAAGGGGTTGATAAAAAGGATATGGAGCTGGAAGAGATTCCGTGTAATTATTGTGGTCAGGTATACGATAATGCATTTGAATGTCCTTATCATCAACAAGTGAAAGATATTAACGAACCCGATAGAATGAATAAATCGGATGAATTGTGTCGTGGCTGTTTATGCACATCGGATAACTTACACTCAATATTTAGTCAAGTGGTTTGGGATCaagatgaagaaaataataTCGAAGAAGTCTCACAGAATTCTTCAACAATTGAAATAACTtatcataaaatgtttgaagAATGTACATCaataaaagtgaataaattggACGGAAAACCGTTAAATTTATGCTCGGACTGTATCGAGGAACTTGGCGCATCGTTTAGTTTTCGTAAGAAATGTATCAATTCAGATAAGGAGCTGGGCACTTTAGAGGTAGATGTGGAAGAAGAACTAAATGATAATGAAACGTGTTTCTCCGAAGAAATCGGAAATGGGCATATGGAGAccactaatttaaaaatagtgcCAATCGAAGAACTCGTTAAATTGACGGAAACTCCGGTTGATGATGAAGAGAGTTTTATGTACGAAGATCATTTAATTGAAATCACCGATGAAGAGGACGAAGAGCATCAAGAAGACAATTGTATATTAGGTACGGTGAATAGTAGAAAACAAAATGATGATGTATCGATTGAGGATGAAAATTCAAGGTATCATACTGTGTTCGCGTGCCAAATTTGCAAAgctattttcaaaaacttaaatGAATTTCAACTTCACAATGTAATTCATAATCCAGATCGAccattcaaatgttttgaaaagAAATGTAAACAATGTTCATTTAAAACCCAAGAAGAGCTCGAGATGCATAATTTAGTATATCATACCGTTGACAACTCCACCAAATGTGCTTACTGTGATAAGGACTGTAAATCTAAACGAGCATTAAAAGCCCATTTGAAGACACATTCAACGGATCGGCCACACAAATGTAAAAATTGCGATAAAGCGTTTATATTTTCGCATCATCTTAAAAATCACGAGAAAATACATGaaagaattaaagaatttacTTGCGCTGATTGCCAAAAATCGTTTATCAATAAAGATCGTTTAGCATTACATCAAAGGATACATACAGGAAAAAGACCACATAAATGCGGGACATGTGAAAAGGCGTTTATAAGTGCAtcatcattaaaaattcattatgcGACACACACAGCCGAGAAACCGTTTATGTGCACGCAGTGTGGAATGTGTTTTAAATTAGAAGTGTTTTTAAACACGCACCTCAGAAAAGCACATTTAGCATATGTTAAAAACGATTCTGACCTAGACGAAACCAAACTTAAACAAGCCAAACCGAAGAAAGaaccaaaattttgtaatttatgtaatactAAATTTGAAACACCGCTTGAATGTACGCGACATATGAAGACACACAGTTATAAATATTCGTGCCACATTTGCAAAAAACCGTTTGCACTGAAAACTAAACTAGACTCGCATATAAAAAATACTCATGCcaccaatttaaaatatgcttGTGGTAAATGTTCGGCAAAATTTCATCGGCCCGATTTGTTACGGTACCACTATTTGCGTAAACACGCCGATGGGAAGTTACCATATACGTGCGACATTTGTGATCGTGGATTTATAACGAATAGTGACTATAAGGTGCATTTACGTAGACATTATGGCGAAAAGCCATACGCTTGTAACATATGTGACAAACGGTATATAACATCTTCCGAATTACTTCAGCATAAACGGTTTCATACGGGTGAAAAACCTtatgtttgtaatttatgtGAAAAGCCGATTGCTACTATTAATCTGCTGTTATATCATATCAAGCAACATAATAAAGATGGGATCATAGATTCGGAACGATATAATCAAGAGGTGAAGGCGATTGAAAGTATTGCGGATGAACAGGTAGATAACGTGCAACAAGAGgagatttaa
Protein Sequence
MYPPNWVDNQYPTNNMPRNPYSSKGYMWQSSEPPSLIEPLEYVYRNPLPYTTPDENRYHDVWTDPNMEQQIVVESFKTQTNYQVNRERTKIRILPEVKPKWKYMDIADKYRENTTIRRNSNYSYSQNHYQSSLNPLNSSVHSKVINTNKKCRGCLKSDKTFEYDVDQQQYFTSIKVKPDFTNSAGLCFNCAEELKLAYNFRKKCLKANKDYKTLLSIKDVPMYETPKPKYQNHHQSMMEYDKSRIGPFECNLCGKIVRTYKGWKNHKIKHGADLNIMCEECGKSFMHESKLHMHIKKEHSIKRFEMFGRDYMSMNIQNEYGVFEDRENIFLKSLFPGSIVPYNTNAVGRFECEICCKVIKSIKTMELHRQKHIRELDLMCDECGKCFTNERKLNLHIRTKHPKYDENSMEYMNKDIWIFKSTYSADSTILQKRPYMGPFECDLCCKLSKTRQDMEYHNQRHMKQLDLVCEECGKGFSYKEKLELHKKMKHSRYQQDVDGYGYDGTGYGKYKTGNHGKKKFKLEDRMESVDYGTNEYRWDDKIQANNFAAQEYNNWEAKLETSDYDTSEFANKWDDKIQASSNYMINDYKYADPIPMNSYNTHHQAATMPTMSTMSSLSNMNSYTNFQPTPQPAVIVPNIIKQKETYPAVVAPKNELKWTDKLKSFTDKNVLSWQDKFKSNPFSKADFKLDEKLKPYIGCGNSTATTIPVNNNNNNINNNAIKSQYTDAVPIMYNNNSIPVAGQQQYGYNNGMNVMNTMKPTYTNDSISTYNSYGKEPLKPLNQYNYQDPVVKPTPQYIYQEPIQSVNQYNYQEPVKPINQYNYPEPVKPIAQSAYNYQDQVKPNQTAYSYPEPVKPTTTAYNYQEPVKSTVGYNYQDPIITKPANQYNYQEPVKPYPNVNVTNEYNVTNEFKYDDQTVPYNDNAHHDDDDDDDYNYDDEGNSYNDDDDNDDEYYNNEDTNVTSYTDVNAKYNYEETMKSYMADANEYKFDDKNKIEPIAKAIEPIIKIEEPKKIVEPVIVPPAVIITNGAKMQTQDSYEVHDYNIEEHLEPFPEEDDEYNYDDDEEISKPDTYDHDDDYDDKNESYPTEDDHYDDDDHIDMSEHAMKVDVPIVEPKTNDIKKLDVKISPKASEIKMIAEEVKIDKENVVKITDPIKEEHKLESDSNLNDHDLKEDDKLESYEEGQDDKFEEDVVSFTEEKNEYDEEDQMNQEGVDKKDMELEEIPCNYCGQVYDNAFECPYHQQVKDINEPDRMNKSDELCRGCLCTSDNLHSIFSQVVWDQDEENNIEEVSQNSSTIEITYHKMFEECTSIKVNKLDGKPLNLCSDCIEELGASFSFRKKCINSDKELGTLEVDVEEELNDNETCFSEEIGNGHMETTNLKIVPIEELVKLTETPVDDEESFMYEDHLIEITDEEDEEHQEDNCILGTVNSRKQNDDVSIEDENSRYHTVFACQICKAIFKNLNEFQLHNVIHNPDRPFKCFEKKCKQCSFKTQEELEMHNLVYHTVDNSTKCAYCDKDCKSKRALKAHLKTHSTDRPHKCKNCDKAFIFSHHLKNHEKIHERIKEFTCADCQKSFINKDRLALHQRIHTGKRPHKCGTCEKAFISASSLKIHYATHTAEKPFMCTQCGMCFKLEVFLNTHLRKAHLAYVKNDSDLDETKLKQAKPKKEPKFCNLCNTKFETPLECTRHMKTHSYKYSCHICKKPFALKTKLDSHIKNTHATNLKYACGKCSAKFHRPDLLRYHYLRKHADGKLPYTCDICDRGFITNSDYKVHLRRHYGEKPYACNICDKRYITSSELLQHKRFHTGEKPYVCNLCEKPIATINLLLYHIKQHNKDGIIDSERYNQEVKAIESIADEQVDNVQQEEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01457776;
90% Identity
-
80% Identity
-