Tcon029978.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- Rel
- Assembly
- GCA_963556175.1
- Location
- OY744477.1:7840373-7844588[+]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.7e-47 5.2e-43 148.3 1.7 1 168 129 313 129 314 0.93 2 2 2.8 2.2e+04 -3.4 0.0 124 162 480 519 468 520 0.71
Sequence Information
- Coding Sequence
- atgtcgacattattaaatttggatACATACGTAAATGAAGAAATAATGAGTgaataTCCAATTAGTACCGCTTTGTCACCATCGATGTACTCTGAAGTTTCATCAAATGATAAGAGTTACTATAATCTAAATTCTTCGCCATCGAATTGTTCCCGATCGCCACTTTCAACGTCAAGTGATACAAGCCAAACGGCaactaatttgcaaaatttaaatattggccatCACATTAATCATACCGGTGGTAATACATTCGGcggttttattaataataacgtatacgaaaacaataacaacaacataatgATGAGTTCTCCAATGCAACCGCAATATTCACACATATATGGTACTAATCAAAcgacaaatttaaatcaacatcCAAATTTAGTCATTACGGAACAACCAATTGAAAAATTTCGCTTTCGTTATAAATCGGAAATGCATGGTACACATGGTTCGTTGATGGGACGACGATCTGAAAAATCGTGTAAAAAATATCCAACCGTTGAGCTGCGCGACTATAATGGTGAAGCTGTTATACGATGTCTTCTTTATCAAACTGAAAAAGATTCGTTAGCACGATCGCAACATTCGCATAGACTAGTCGTTCGTGATGGTGATATTGATCGCGATGATCCGCACGATGTTATTGTGTCAACGGAAAAGGGATTTCAAGCGATTTTTCAGGGCATGGGAATTATTCATACGGCCAAGAAATATATAGTGGAAGAGTTGTTTAAgaaaaaagttcttgaaaaacaAGTAGAATTGGGACGAGTGCTGACATCGCGAGAAGAACATCAGCTAAAGAAACAAGCAGAACATGAAGCGAAAACTATGAATTTGAATCAAGTTTGTCTATGCTTCCAAGCGTATATTGTGAAAAATGATGTATGGAAGAAGTTGTGCGAGCCAGTCTATTCGAATCCCATCAACAATATGAaaagTGCTTTAACCGgggaattaaaaatatcaaggtTAAGTGCCGCAAGCAGTAGTGCTTCTGGAGGGGACGATTTAATCCTACTTGTTGAAAAAGTTGGAAAAAaaaatataaaagttcgATTTTTTGAACTAGATGACGAGGATCGAGAAGTTTGGGAGGCATACGGCGTATTTACCGAAGTGGATGTACATCATCAATATGCAATTGCATTGCGAACACCagcatacaaaaatattgatattgcaGAACCGGTTGATGTATTTATTCAACTATATCGACCGAGTGATCATGATCGTAGTGAAAATATGCCATTCCGCTATAAGCCACGAAATTATACAGGTCGTAAACGACCACGTATTAGTTCCAGTGCTAGCTCTAATAATATTCCAACGACAATACGTCACGCCGGATCGACAAACAGTTCTTTGTCCACATCATCATTTTCGTCGAACGATTTTCGTTTGAATACAAACGAAATATGTGATATGTTGAAAGGTTCGAATCAAAATGATGTCGAGCTAATggatttgataaatatttgttcgTCTGAATTTAAAACCACCATATTAGAAACGGATGGTACCTCAACGAATACAGCAAAATCGGTTATACAACGTGGTCCGGGTGCATTGCCATTGCGTCGAAGTTTCGATGATGTGGCAAAACATTTACCTGATCCTAAAAGTGGTGCCAATCCTGTTCAAGACATAGCAGTCTTGCGACGACTAACCGAAATTACCTTGGACGGTGATAATATACTACACTGGTCGATTCGATACGAAGAGGTTgccatttttgaaaaacttatgcaattaattgataaatacaaTTTGACTGATttgctacaaattaaaaatatcgacGAAGAAACTTGTCTGCATATCGCATGCGCAACCGATCATATATGGACAATACGATCGTTGTTAAATATTGGAGCAAATCCTAATCTATCCGACAGCAAAGGAAATACACCGTTACACGTGGCTATCGAGCGTGAACGTGATATGTGTATAGCGAAAATTTTGGATGAAATTAATTACACCTCACGAtcgaaaaaattagaaatcgaCTTGGCGAATAACGAGGGTATCACACCGTTGCATTTagctgttaaaaaaaataataaaaaatatgtccaAATGTTGATCGAAAAGAAtgcatcaattaaaatttcggAACCAAAACAGGGAAATAACGTTTTACATATTGCCGTCGAACATGGAACGACCGATATACTTAAATATCTTTTCGAGAAGACAAATATCCGATTAAAAGTTAATTCAAGGAATAGTTCCGGTTATACGCCGCTGCATTTAGCGTGCGCTAAAAATAATGATAGTATGAAACCAATTATTGCATTACTTCTGGAAAAGGGCGCCGATCCTACAATTGAACACAACGGCCATCGGATAATCaaaacaaatcatGAAGATCttagtgatgatgatgatgatgaaacgCCTTGCAATTCATTCGAATTGGCTAAAAATAAACCGGAAATTTTACAGATGCTTAAAGAAAAAACGGTCCAATTTTCACCAGGACACGTTAAAAAAGAATATATCGAAGATAGTATGGACACCGATAGTAATTTAAGTACCAAATCGCCAAGCACGGATAAGGatgaatttatagattttgacGAAGACTGCCTGATCGCTTtgtgtcaaattttaaataagcaatCGAAATGGAAGCAGATTGCAGATAAATTAGATATTCAGATTACCACAAAATTGGAATCGTCGAGTAATccgacaaaaaatttactaaatttaatcaataagcAAGTAACaacaagtaaatttattaatgttttatcgGAATTGGGTGAACGTGACGCTATTACGGCGGTTGATAATATGATGGCACGAATAGAAGAGCCAgattttgagtaa
- Protein Sequence
- MSTLLNLDTYVNEEIMSEYPISTALSPSMYSEVSSNDKSYYNLNSSPSNCSRSPLSTSSDTSQTATNLQNLNIGHHINHTGGNTFGGFINNNVYENNNNNIMMSSPMQPQYSHIYGTNQTTNLNQHPNLVITEQPIEKFRFRYKSEMHGTHGSLMGRRSEKSCKKYPTVELRDYNGEAVIRCLLYQTEKDSLARSQHSHRLVVRDGDIDRDDPHDVIVSTEKGFQAIFQGMGIIHTAKKYIVEELFKKKVLEKQVELGRVLTSREEHQLKKQAEHEAKTMNLNQVCLCFQAYIVKNDVWKKLCEPVYSNPINNMKSALTGELKISRLSAASSSASGGDDLILLVEKVGKKNIKVRFFELDDEDREVWEAYGVFTEVDVHHQYAIALRTPAYKNIDIAEPVDVFIQLYRPSDHDRSENMPFRYKPRNYTGRKRPRISSSASSNNIPTTIRHAGSTNSSLSTSSFSSNDFRLNTNEICDMLKGSNQNDVELMDLINICSSEFKTTILETDGTSTNTAKSVIQRGPGALPLRRSFDDVAKHLPDPKSGANPVQDIAVLRRLTEITLDGDNILHWSIRYEEVAIFEKLMQLIDKYNLTDLLQIKNIDEETCLHIACATDHIWTIRSLLNIGANPNLSDSKGNTPLHVAIERERDMCIAKILDEINYTSRSKKLEIDLANNEGITPLHLAVKKNNKKYVQMLIEKNASIKISEPKQGNNVLHIAVEHGTTDILKYLFEKTNIRLKVNSRNSSGYTPLHLACAKNNDSMKPIIALLLEKGADPTIEHNGHRIIKTNHEDLSDDDDDETPCNSFELAKNKPEILQMLKEKTVQFSPGHVKKEYIEDSMDTDSNLSTKSPSTDKDEFIDFDEDCLIALCQILNKQSKWKQIADKLDIQITTKLESSSNPTKNLLNLINKQVTTSKFINVLSELGERDAITAVDNMMARIEEPDFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457108;
- 90% Identity
- -
- 80% Identity
- -