Tfem008620.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000213.1:252770-255926[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-06 0.00086 19.1 0.0 2 38 201 237 200 243 0.84 2 4 9.7e-11 7.9e-08 32.0 0.0 5 39 254 287 251 294 0.85 3 4 0.23 1.8e+02 2.0 0.0 21 34 321 334 307 339 0.80 4 4 1.6e-11 1.3e-08 34.5 0.0 4 39 365 400 350 405 0.93
Sequence Information
- Coding Sequence
- ATGTCTGAAGTCGGTAGCCAACATGAAATTGATCAGAGCTATTGCTTCAAATGGAACGATTATCAAAATCACTTGTCCGATGTAGTTAGACAGCTTTTGGAGGAAGAATGTATGGTGGACGTTACTTTGTCCGCTGCTGGAGAACGTATTCATGCTCATCGAATCGTTTTATGTGCTTGTAGCACTTTATTTCAAGATGTGCTTAGCCAAGTGAATGAAGATCATCCAACTATAATATTGAGCGATATATCTCCGCAAGATGTAAGGTCCATCATTGAATTTACATATCATGGTGAAGTTCGCATTCCGGTTGAAAACATTAGCAGTTTGTTGGATGCAGCACGATCTTTGAAGATATGTGGTCTTATAGAGATTGATGGAATTGATGAGAATGATGTACCTATAAGTACTAAGGAATTTGTTCCTGACAATAAGCAAGAATCTGTGACTGAAATAAGTGAGACGGAAGTAAATGTGATCAGTACATTAGATCGAGGATATCAAGATCTACCATGTCAAGCCCAAAGAAATATAACCGATGACCCTGCATTAACCAAAAGGAGAAAACGTAGGCGTGATACGATAAAGAGAGATTATAGTGACGATATGTTAGCATCGGCAATTGATGATTTGCGATCGGGACAGACTTTGATAGAGACTGCAACAAAACATAATATACCTCGCTCTACATTGTATATGCGTGCTAAAGCATTAGGTATACACTTAAATGCATCAAGAAATGAATATCCTGCAGAATGCATGAAAGCAGCGATAAATGCTGTAATTGGGGGTTCGAGCCTACAACATGCATCAGAAATGTTCAGCATACCGAAAACAGTACTTTGGAGACGGATTCAAAAAGAAGGTTATCAAATTTTACGGTCTGAAATGAAAAGATCATACGGTTCGGATAAAAGAGAAGCAGCGGTTAAGGCATTAGAAAGAGGAGAGAATCTCACCAAAGTTGCACTTGAGTTTAAAATCCCGAAGACCACATTATTTAGAGATAAAGCACGACTAGTTGACGAGGGAAAATTGCCATTATCATTTTGGAAGAAACGGAAAATAGAAAATGAAGAATTAAAAAGGTCTCGACTCGAGGAAGCTGTAGCAGCTTGCAAAGGGGGCAAAATGTCACAAGCAGCAGCTTCAATGACTTATCATATACCAAAGACAACTATTTGGAGACGGCTTCAACAAGATGGTAAAAAATCTGAGCGATCTATAAATGTAAAAAAACATCAAAGGATTAATGAGTCGGCACAAAACGTGGAAGATAAATCGGAAAGAGGTTCTGACTTTACTTATTGTGAGGTTTCATCAGAAATACCGATAACTTATATCGATGAAAATAGCATACCTGAAGATTCTGTAATAATCTTAACAACAGATGATATGGATGGTCTTAATTTGGAAGGAGGAAGACAAATCATTGTAAATCCTGAGTCTGGACAAGAGTATGTTCCATGTACTATTAGTATCGAAGACAATTCAAATTATACAGAAGCTGAAAGTTAG
- Protein Sequence
- MSEVGSQHEIDQSYCFKWNDYQNHLSDVVRQLLEEECMVDVTLSAAGERIHAHRIVLCACSTLFQDVLSQVNEDHPTIILSDISPQDVRSIIEFTYHGEVRIPVENISSLLDAARSLKICGLIEIDGIDENDVPISTKEFVPDNKQESVTEISETEVNVISTLDRGYQDLPCQAQRNITDDPALTKRRKRRRDTIKRDYSDDMLASAIDDLRSGQTLIETATKHNIPRSTLYMRAKALGIHLNASRNEYPAECMKAAINAVIGGSSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMKRSYGSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKIENEELKRSRLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKSERSINVKKHQRINESAQNVEDKSERGSDFTYCEVSSEIPITYIDENSIPEDSVIILTTDDMDGLNLEGGRQIIVNPESGQEYVPCTISIEDNSNYTEAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_01454290;
- 80% Identity
- iTF_01454290;