Tbis010380.1
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- -
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010000321.1:140384-145488[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9e-05 0.0049 17.2 0.8 1 23 104 126 104 126 0.95 2 11 0.00014 0.0074 16.7 1.7 1 23 132 154 132 154 0.96 3 11 3.2e-05 0.0017 18.7 0.6 1 23 249 271 249 271 0.98 4 11 7.9 4.3e+02 1.7 0.3 2 23 278 300 277 300 0.90 5 11 6.7e-05 0.0036 17.6 0.0 2 23 352 374 351 374 0.93 6 11 0.025 1.4 9.5 0.0 2 23 386 407 385 407 0.93 7 11 7.6e-06 0.00041 20.6 0.2 1 23 431 453 431 453 0.98 8 11 0.00058 0.031 14.7 0.2 1 23 459 481 459 481 0.97 9 11 0.00032 0.018 15.5 0.3 1 23 487 509 487 510 0.95 10 11 0.0051 0.28 11.7 0.6 1 23 524 546 524 546 0.96 11 11 0.00019 0.01 16.2 0.1 1 20 705 724 705 727 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAAACATTTGGACTTTGGGAAGATGATAGAGGGCCAGATAATATGATAGCTGTAACTGATCAAATAGCAGCAGAAAATTTAATGTTTTTATCACAAGATGTTGTCTATACTGAAACTGCAACATTGGATAATGAGGAATTCGTCACAGAGGAAATAATTACTGATGATTGGACACCCGGTGGACAAGAACGGGTTGAAGTTCCTTTAGAACATCTAACAAATCCTGTGCTAGATCTCAAGCAAGAAAATGATGTCGACGTCCCTCTACCTACGGTTCAGGATGAATACACGGCCATGCGGCCGTTCCCATGCGACTTCTGCTCGCGAAGATTCCGTAAGAAAGCATCACTTATGAACCATATGGTTGCTCATCAGAAAGACAGACCTCATGCTTGCAACTTGTGTGGTGTCAGATATACACGCAGATCTGATCTCATGACACATTTCAAAGTACATGCGTTTGTTCCAGATGATGGTCAATATGGTGATGAACCCCATGAGAATGATAATAGTTTTGTCATGCAAAAGAAAAAGCGTGGCAGACGGAGAAAACCAGACCCGGAACCAGAGCCTGAGCCTGAGGAAGAGGAAGATGATGGTTGGGAGAATATGACATCTGCACGAACACAACAATGGTTACGTCGTCCTAAATCATCTCCAACACCCTCATCTCCAGCTTCAGCCGACTCTACTGCATCTGCTGCAACTCCTCCCCCGCCAGTTGACCCTAGAAAACCATTTGTATGTAACCATTGTGGGGTCGGGTTTGCAAGAGAGAAAGCACTCAAGTCACATTCTAGAATTCATGGTGGTGATTCCCCATTAGAATGCAATGCTTGTGGTGAATTATGTTGGTCGAGGGAGGCGCTAGTATCGCATACACGATTAAGACATCCGCATTTACCAAAGCCGTCGTTAAGACGCCAACCGTCTTATACTGAAGATAATTCAGATGATGACATGGATTTCACACTGTCACCTACGCATCAAAGTAGTGAGAGCAATCATTACGTTTATGAAAAAATAAAGGGCCCAGATGCCGATCTGCAATGTCAAGATTGTGGCGTTGCTTTCCAAAGAGCCGATTTGTTGAAGAGACATGTGAATGCTGCTCATAGCCACAAGCGCAGTGGCGGCGTCGCATGCAACGTGTGCGACGTGTGCGGGGAGACCTGCGCGGACGCATTGCAACTACTCGCACACGCAGAGGGACACGCACGCGCCTCGCACAGATATAAGAAAAGTAATCGTGGCAAACATGGTCCCACTTCAGGTACACGGCAGTTTCCTTGCAAAGAGTGTGgcaaagtatttggatcacgtagctctcaacaaatccatgtgcggattcatactggtgagcgaccctatgcatgtagattctgctggaaggcattcgctgatggtggcactttaaggaagcacgaacgaatacatactgGTGAGAAACCGTATGCCTGTGCTGTTTGTCCTCGTGCCTTCAATCAACGCGTAGTGCTACGGGAACATGTGCGGTCGCATCATTCTGCGCCTGACTATAGAATAGCTAATGGTGGTCCGGCATTCATTTGTGGTGTTTGTGGCCGAGCGCTGCACACAAGTACTGAATTAGTTCATCATTTAATACAACATTGCGATGCTAATACCGCTATGAAAAGACAACCTCAGGCTGGTCCTCGCAAATACAAACGCCGGAAACAATTTCAATACAAAGCTGAAGATTCGGCTGGCACGTGGAGAGAACGCAGTTCAACACCTGTCTCACCAAAACCACGGAGACGAATGAAAGTAGCTGCCGCTGCTACTAGACCTAAAATGATACACACGGAAGACCCAAGAGCTAGAAATAAACAGCTACGACCGCGTCGTCCGCCGCGTCACCCGGCCGATGACTTACGTGCAATACAACCACATCTCTCCCCCTCTCCGCCATTGCCATCTCCACCATTGCCGTCTCCGCCATTACCAACTTCTCCATTGCCATCTTCTCCATTACCATCTTCCTCATTGCCATGTTCGCCTCTGCCGCGATCTTCCCCATCACCGCCATGTTCTCCCGTTTTTGCGACGCAAGTTATTGTTAAAAGGGAGTCTGAAGATGTGTTTTATAAATGTGAAATCTGTGATCTCGAATTCACGAGACGGAATGACTTGTTAGTGCATGTGCCAATACATATATGA
- Protein Sequence
- MEETFGLWEDDRGPDNMIAVTDQIAAENLMFLSQDVVYTETATLDNEEFVTEEIITDDWTPGGQERVEVPLEHLTNPVLDLKQENDVDVPLPTVQDEYTAMRPFPCDFCSRRFRKKASLMNHMVAHQKDRPHACNLCGVRYTRRSDLMTHFKVHAFVPDDGQYGDEPHENDNSFVMQKKKRGRRRKPDPEPEPEPEEEEDDGWENMTSARTQQWLRRPKSSPTPSSPASADSTASAATPPPPVDPRKPFVCNHCGVGFAREKALKSHSRIHGGDSPLECNACGELCWSREALVSHTRLRHPHLPKPSLRRQPSYTEDNSDDDMDFTLSPTHQSSESNHYVYEKIKGPDADLQCQDCGVAFQRADLLKRHVNAAHSHKRSGGVACNVCDVCGETCADALQLLAHAEGHARASHRYKKSNRGKHGPTSGTRQFPCKECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDYRIANGGPAFICGVCGRALHTSTELVHHLIQHCDANTAMKRQPQAGPRKYKRRKQFQYKAEDSAGTWRERSSTPVSPKPRRRMKVAAAATRPKMIHTEDPRARNKQLRPRRPPRHPADDLRAIQPHLSPSPPLPSPPLPSPPLPTSPLPSSPLPSSSLPCSPLPRSSPSPPCSPVFATQVIVKRESEDVFYKCEICDLEFTRRNDLLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01451713;
- 90% Identity
- -
- 80% Identity
- -