Tpel000322.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411258.1:5150502-5159853[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00016 0.0086 16.5 0.9 1 23 126 148 126 148 0.95 2 11 0.00013 0.0075 16.7 1.7 1 23 154 176 154 176 0.96 3 11 4.7e-05 0.0026 18.1 0.6 1 23 277 299 277 299 0.98 4 11 2.9 1.6e+02 3.0 0.5 2 23 306 328 305 328 0.92 5 11 6.6e-05 0.0037 17.6 0.0 2 23 380 402 379 402 0.93 6 11 0.025 1.4 9.5 0.0 2 23 414 435 413 435 0.93 7 11 7.6e-06 0.00042 20.6 0.2 1 23 459 481 459 481 0.98 8 11 0.00057 0.032 14.7 0.2 1 23 487 509 487 509 0.97 9 11 0.00032 0.018 15.5 0.3 1 23 515 537 515 538 0.95 10 11 0.0075 0.42 11.2 0.6 1 23 552 574 552 574 0.96 11 11 0.00059 0.032 14.7 0.1 1 20 707 726 707 729 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAAACGTTTGGCCTTTGGGAGGATGATAGACATGGCTCTGCTGGTGAAGTGGTTATTGGTCTTGATACATCCCATACTAGTGCCTACCATGCTTTGGGTGCGGATAACATGATAGCTGTAACAGATCAAATAGCGGCGGAAAACTTGATGTTTTTGTCACAAGATGTTGTCTACACTGAAGCGGCAACATTGGACAATGAGGAATTTGTCACAGAGGAAATAATTACTGATGACTGGACACCAGGTGGACAAGAACGGGTTGAAGTTCCTTTAGAGCATTTAACAAATCCTGTGCTAGATCTTAAGCAAGAAAATGATATTGATGTACCTCTGCCCACTGTTCAGGACGAATACACGGCAATGCGTCCATTCCCATGCGACTTCTGTTCTCGGAGATTCCGTAAGAAAACAGCACTTATGAACCATATGGTTGCTCATCAAAAGGACAGACCTCATGCGTGTAATCTTTGCGGTGTTCGATATACACGCAGATCTGATCTTATGACACATTTCAAAGTACATGCCTTTGTTCCAGACGATGGACAATATGGTGATGAGCCACTTGATAATGATCAAAGTTTCGTCAAACAAAAGAAGAAACGTGGCAGACGGAGAAAACAACCGGAATTCGACCATAAACCTGAACCAGAACCCGAAGAAGAGGATGATGACGGCTGGGAGAATATGACATCAGCGCGAACGCAACAATGGTCACGTCATACTCGGGAACTTCCTAAAACGCCCCCTTCACCCGCTTCTCCGGCTTCACCTGACACTACTCCATCTGTGTCTCCTCCTCCACCAGTTGATCCTAGGAAACCATTTGTATGCAGTCATTGTGGGGTTGGATTTGCCAGAGAGAAAGCACTCAAGTCACATTCTAGGATACATGGTGGTGATTCCCCGTTAGAATGCAATGCTTGCGGTGAACTATGTTGGTCGAGGGAGGCGTTAACATCACATACACGATTACGTCATCCGCATTTACCAAAGCCGACGCTCAGACGTCAACCGTCATATACTGAAGATAATTCAGGTGATGATATGGATTTCACACTATCGCCTACGCATCAGGATAGTGAGAGTGATATGTATATTTATGAGAAAATAAGAGGTCCAGATGCCGAGCTGCAATGTCAAGATTGTGGTGTTGCTTTCCAAAGAGCCGATTTGCTGAAGAGGCATGTCAATGCTGCTCACAGCCACAAGCGCAGTGTGGGCGCCGCATGCAACGTGTGCGACGTGTGCGGGGAGACCTGCGCAGACGCATTGCAACTGCTCGCACACGCAGAGGGACACGCACGCACCCCGCACAGATATAAGAAAAGTAATCGTGGCAAACATGGTCCTACTTCAAGTTCGCGGCAGTTTCCGTGTAAAGAATGCGGCAAAGTATTTGGATCCCGTAGCTCTCAACAGATCCACGTGCGAATTCATACCGGTGAGCGACCTTACGCGTGTAGATTCTGCTGGAAGGCGTTCGCTGATGGTGGCACGTTGAGGAAACACGAACGAATACATACTGGTGAAAAACCATACGCATGTGCCGTGTGTCCTCGTGCCTTCAATCAACGTGTAGTGCTACGGGAACATGTACGGTCGCATCATTCTGCGCCTGACTATAGGATAGCTAATGGTGGTCCGGCATTCATTTGTGCTGTATGCGGCCGAGCGCTGCACACGAGTACGGAATTAGTTCATCATTTAATACAACATTGCGACGCTAATACTGCCATGAAAAGACAACCTCAGACTGGACCGCGCAAATACAAGCGGCGGAAAGTTCAGTACAAACAGGATTCGTCGCCCGGCACTTGGAGAGAACGCAGCTCAACACCAGTCTCACCAAAACCACGGAGGCGTATGAAGGCAGCCGCCACTGTTTCGAGACCTAAAATGATACACACGGAAGACCCGAGAGCTAGAAATAAACAGCTCCGACCGCGTCGTCCGCCGCGTCACCCGGCCGATGATTTACGTGCTATACAACCGCATCTATCACCCTCTCCACCGTTGCCGCCTTCTCCTCTGCCACAGTCTTCCCCATCGCCACCGTCTTCCCCCGTTCCCGGAATTCAGGTTATTGTTAAAAAGGAGTTGGAAGAAGAATATTATAAGTGTGAAATGTGTGATCTCGAATTCACAAAACGGGATGATTTATTAGTACATGTGCCAATACATATATGA
- Protein Sequence
- MEETFGLWEDDRHGSAGEVVIGLDTSHTSAYHALGADNMIAVTDQIAAENLMFLSQDVVYTEAATLDNEEFVTEEIITDDWTPGGQERVEVPLEHLTNPVLDLKQENDIDVPLPTVQDEYTAMRPFPCDFCSRRFRKKTALMNHMVAHQKDRPHACNLCGVRYTRRSDLMTHFKVHAFVPDDGQYGDEPLDNDQSFVKQKKKRGRRRKQPEFDHKPEPEPEEEDDDGWENMTSARTQQWSRHTRELPKTPPSPASPASPDTTPSVSPPPPVDPRKPFVCSHCGVGFAREKALKSHSRIHGGDSPLECNACGELCWSREALTSHTRLRHPHLPKPTLRRQPSYTEDNSGDDMDFTLSPTHQDSESDMYIYEKIRGPDAELQCQDCGVAFQRADLLKRHVNAAHSHKRSVGAACNVCDVCGETCADALQLLAHAEGHARTPHRYKKSNRGKHGPTSSSRQFPCKECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDYRIANGGPAFICAVCGRALHTSTELVHHLIQHCDANTAMKRQPQTGPRKYKRRKVQYKQDSSPGTWRERSSTPVSPKPRRRMKAAATVSRPKMIHTEDPRARNKQLRPRRPPRHPADDLRAIQPHLSPSPPLPPSPLPQSSPSPPSSPVPGIQVIVKKELEEEYYKCEMCDLEFTKRDDLLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01453464;
- 90% Identity
- -
- 80% Identity
- -