Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4.2 4.1e+03 -2.4 0.0 17 22 1 6 1 8 0.91

2 4 1.1e-17 1.1e-14 53.8 0.0 1 43 74 117 74 119 0.95

3 4 7.4 7.3e+03 -3.2 0.1 10 23 193 209 192 211 0.61

4 4 2.4 2.3e+03 -1.6 1.2 6 15 210 219 205 220 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4.2	4.1e+03	-2.4	0.0	17	22	1	6	1	8	0.91
2	4	1.1e-17	1.1e-14	53.8	0.0	1	43	74	117	74	119	0.95
3	4	7.4	7.3e+03	-3.2	0.1	10	23	193	209	192	211	0.61
4	4	2.4	2.3e+03	-1.6	1.2	6	15	210	219	205	220	0.82

Coding Sequence: ATGTCGGTGAACAAGGCAACTATTTTAACATCTCGCGCTCCTGTACTCTTCGCTAAGCTTCTGGAGAATTCTCATGCCTGGCTGAGTCCCTCCACTTCTTCCATAGCAGCAGACAGTTATCAATATCAGTTACAATCAATGTGGCAGAAATGCTGGAATACAAACCAAAGTTTGGTCCAAAATCTTCGCTTTAGAGAAAGAGGACCATTGAAGTCTTGGAGACCAGAGACAATGGCCGAAGCTATATTCTCCGTGTTGAAGGAAGGGTTGTCCCTGTCTCAAGCTGCTCGAAAATATGATATTCCTTACCCGACTTTCGTGCTGTATGCTAACAGAGTTCATAATATGCTGGGTCCCAGTGCCGATGGAGGCGCAGATTTGAGACCAAAGGGTCGAGGACGCCCGCAGCGCATCCTACTTGGCGTATGGCCAGACGATCATATAAGGGGTGTGATCAGAGCCGTTGTATTTCGCGACACGCACACTCCACATACTCCGCACATCAAGGAAGAACCAATGCCAGTATATTCCGCTTTAACGGATGGAATAGGCGTGCAAGCAGCATATGCTGGGGTAGCAGCGTGCAGCAATGGTCGCGAAGGTGGTGTGTCACCCAATGCCGCGGCCGCAGCTGCTGTTGCCGCCGTCGCTCATGGTCTTCGTCGCCAAATGTGCAATATGGTGGTCGCCGCCCAGCGCCCGGGGGACCATCCTGCTCACCTGGCTATGCCACAGATGCCACTGCAGTCACCGCGACTACCGTCTCCACTTTCTTCTGGACTAGAATCACCACTTTGCTCTCCACCACCACCAGGACATGCTCTCGAACCACCGAAGCCGACCGATCCCTTCCGCCCTTTTATTTCACCACGCCCTGACAGTCGTTATGGAATTGAACGTGAAATGCCTGATATTCCTGAAATGGGTCCACCGAAAACACCGATTGCTATGATTGCCAAGAATGGCAAGGATCAGCTTTCCACACCGGTCTCAGTCAAACTGGAGTTGCCTCATCCGGAGGCTCGTGCAGAGAACATCTGA
Protein Sequence: MSVNKATILTSRAPVLFAKLLENSHAWLSPSTSSIAADSYQYQLQSMWQKCWNTNQSLVQNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDDHIRGVIRAVVFRDTHTPHTPHIKEEPMPVYSALTDGIGVQAAYAGVAACSNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPGDHPAHLAMPQMPLQSPRLPSPLSSGLESPLCSPPPPGHALEPPKPTDPFRPFISPRPDSRYGIEREMPDIPEMGPPKTPIAMIAKNGKDQLSTPVSVKLELPHPEARAENI

Sequence clustering based on sequence similarity using MMseqs2