Tbis003379.2
Basic Information
- Insect
- Tineola bisselliella
- Gene Symbol
- Rfx2
- Assembly
- GCA_028551675.1
- Location
- JAPWLS010000839.1:157161-171347[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-37 9.5e-34 115.8 0.1 3 78 204 279 202 280 0.97 2 2 1.7 9.9e+03 -2.8 0.0 24 32 608 616 591 624 0.65
Sequence Information
- Coding Sequence
- ATGGCAGCGCGGATCGCCGGCCCTACACAGGGCGCGGGCGGCGGTAATTCCCCTGGGTCGTCGGTTCGAGATCTCATCGTTATCCCGGAAATATCTAACTCTATACACTTACAACACTCAATACAACAGGTTCAGAGCTCTGTTGTTCAGGTCGATGAGGATAGCTCCGGGAACTCCAGTCCCGCGGGCGAGTCTCAGCATACGTATATAACTGTATCGAACGAATGGCCAATTGAAGTGCAAGTGAAAACGGAACACAATGCAAGTGATCAAGAAAGTGAAGCTGGCTCCGGTGTCAATTATCATGTACAATATGTGGAGCCGCAAGACGTTTACACGCAACCGCACCAAACGCATATGGAGACGCTCCGCTCATATCCTCTCTACAATGTCGGTTCAGTCGAAGGAGCGGGCAACGGTGATCAGGGTGACAGCGATTGGGGAGGGGTAGAGTTAGCCGGATATGGGGTAGTACTAGGATCTGGTGGGCCCGGTAGTACAGGCGGGACTCCCGGTACCGATGGGACAGGTGGAACTGAGCCGGAGGAAGGAGGACCTGGTTCTCCTGATACTCCGGCGGCGGCTCTCACTCAACCGCGAATGGCACCAGCTACTGTGCAATGGTTATTGGATAATTATGAAACCGCTGAAGGTGTATCTCTACCTCGTTCGACCCTATATTCCCATTACCTCCGACATTGCACGTCGCATCGTCTGGATCCTGTGAACGCGGCGTCCTTCGGAAAACTAATTAGATCTGTTTTCGTTGGACTTCGCACTAGGAGGCTTGGAACTAGGGGCAATAGCAAATACCATTATTATGGCATACGAGCGAAGTCGACTGCGAGCGATTCTCCATCGAGAACCATCGAGCCTTCCACCCTTGAAGATAAACAAGATGATTCTATACAGGACAGAGATCGTGATATGTCCGAAGCCACAGTGGGCGCCGGTGGTCCTCACAGGCAGTACTTGGGATCGGTGTTTGCTCCCGATCCGCCCGTCTTTGAAGAAACACCTGCCGATTGTACTGAGGCGGAACTGAACGCGCTACATGCTCATCACAAACAACACGGTGTGGAGTTTCTGGAAGCGGTCGCGGCTCTTGATACGAATGCAGTAGAACGGGCGAGACGGTCTTTCTGGAGAAAACCACCTCCTGAGTTATGTAGGAAGTCCTTGTATAAACTTATGAATAAAAAGGAAATCGTAGCGTGGTTAAAGCAAGCGGAATTGGCGTTATATCAGAAGGCTGTAGAGCTGTTATTGCCTGACGTGTTGAGACCAATACCACCACAGTTGACACAGGCAATTCGCAACTTCGCCAAGAGCGTGGAGGGTGCCCTCAGCAGTGGGTCTTGCATGGCACCTGCGAGCGCGGGGAGGGTGCAGGCTGGCACGGCGGCTGCGCTCTGTGGTGCTCTCCGGCGGTACACCAGCCTCAACCATCTGGCGCAGGCTGCCCGAGCAGTGCTGCACAATCATCATCAGATACAACAGATGTTAGCCGATTTGAACCGCGTGGATTTCCGCGTAGTGCGCGAGCAAGCCGCGTGGGCGTGCGCGTGTAGTAATCCACGGACTGCCGTGGCTTTGGAACATGATTTTAAGGCAACACTAGGTCGTGGTGCAACACTAGAGCAATGGGCTAGTTGGTTGGAGGCGTGTGTGAATCGCTCGCTGTCCCCGCACGAGCGCCGCTCTGACTATTGCTCCCGCGCTCGGAGGTTCCTCCTCGACTGGTCTTTCTACTCGTCTCTGGTCATACGCGAACTGACTCTGAGGTCCGCTGCTAGTTTCGGATCGTTCCATCTCATTCGTTTATTGTACGATGAGTATGTCGCGTATCTGATCGAACGACGCGTAGCCCAGCATGAGAAGGCGCCTCCTATAGCGATTATGCATCCGCCTATGGATGACGATGATGACATAGCAGATGAGAATAGAACGGAACCAGATGAAGATGAAGCAGATCTCGATTGGGAAGATGAAGATGATGATGATCAGGTAGATGGTAAGAAGACAAAGTTAAACTAA
- Protein Sequence
- MAARIAGPTQGAGGGNSPGSSVRDLIVIPEISNSIHLQHSIQQVQSSVVQVDEDSSGNSSPAGESQHTYITVSNEWPIEVQVKTEHNASDQESEAGSGVNYHVQYVEPQDVYTQPHQTHMETLRSYPLYNVGSVEGAGNGDQGDSDWGGVELAGYGVVLGSGGPGSTGGTPGTDGTGGTEPEEGGPGSPDTPAAALTQPRMAPATVQWLLDNYETAEGVSLPRSTLYSHYLRHCTSHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKSTASDSPSRTIEPSTLEDKQDDSIQDRDRDMSEATVGAGGPHRQYLGSVFAPDPPVFEETPADCTEAELNALHAHHKQHGVEFLEAVAALDTNAVERARRSFWRKPPPELCRKSLYKLMNKKEIVAWLKQAELALYQKAVELLLPDVLRPIPPQLTQAIRNFAKSVEGALSSGSCMAPASAGRVQAGTAAALCGALRRYTSLNHLAQAARAVLHNHHQIQQMLADLNRVDFRVVREQAAWACACSNPRTAVALEHDFKATLGRGATLEQWASWLEACVNRSLSPHERRSDYCSRARRFLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVAYLIERRVAQHEKAPPIAIMHPPMDDDDDIADENRTEPDEDEADLDWEDEDDDDQVDGKKTKLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01451207; iTF_01452073;
- 90% Identity
- iTF_01451207;
- 80% Identity
- -