Ttri010547.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:4445098-4456367[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.087 4.9 8.1 4.6 2 23 350 371 349 371 0.97
2 20 0.0011 0.061 14.0 1.1 1 23 377 399 377 399 0.99
3 20 0.026 1.5 9.7 5.0 1 23 405 427 405 427 0.98
4 20 2.3e-05 0.0013 19.3 0.3 1 23 433 455 433 455 0.99
5 20 0.00063 0.035 14.8 0.9 1 23 461 483 461 483 0.99
6 20 0.00063 0.035 14.8 0.9 1 23 489 511 489 511 0.99
7 20 0.00046 0.026 15.2 0.2 1 23 517 539 517 539 0.99
8 20 0.00014 0.0078 16.9 0.5 1 23 545 567 545 567 0.99
9 20 0.00014 0.0078 16.9 0.5 1 23 573 595 573 595 0.99
10 20 8.6e-05 0.0048 17.5 0.2 1 23 601 623 601 623 0.99
11 20 5.1e-06 0.00029 21.4 0.8 1 23 631 653 631 653 0.99
12 20 8.8e-05 0.0049 17.5 0.3 1 23 659 681 659 681 0.99
13 20 0.0024 0.14 13.0 0.2 1 23 687 709 687 709 0.99
14 20 1.5e-05 0.00083 19.9 0.8 1 23 715 737 715 737 0.99
15 20 4.5e-05 0.0026 18.4 0.2 1 23 743 765 743 765 0.99
16 20 0.00044 0.025 15.3 0.8 1 23 771 793 771 793 0.99
17 20 0.0014 0.077 13.7 0.2 1 23 799 821 799 821 0.99
18 20 8.8e-05 0.0049 17.5 0.3 1 23 827 849 827 849 0.99
19 20 0.00043 0.024 15.3 0.2 1 23 855 877 855 877 0.99
20 20 2.1e-05 0.0012 19.5 1.5 1 23 883 906 883 906 0.98

Sequence Information

Coding Sequence
ATGAACGATATATTATGTGCTACATGTTTGGCGACTGATCGCAGTTTAATAACTTTAAAGTCTGACATTTTTGGTTTATTACAATATTTGATGCTGCAAAAAGGATATGATGAATTGAAAATAACTGACCGAGTATGTTGGGAATGTTTTGCACAATTGAACAATGTTAGAAAATTCCAGAATAAAGCATTTGATAGTTTACGAAGACTACAAGAATATTGTTATAAAATGGAGAAACAGGACAACCAAAGTACATATATCAAAGATACATTGGTACCGGTGAGTGGTTTTAAACCCGTGCCACTTGGCTTACGTAGCCATTGCACTGCCACTACACCACGCTTGCGTATATTTGATAATATTTGTGATATTGATAATATGATAATATTGATAATATTTGAGTACACAAATATTTCATGTAAAACATTAACTAGAGTAAAATTAAAAAATATAAACATACATAATGATTTGAATGAAAGTGATGAAGAATATGATGAAGAGGATATTTTAGAGCTAGATCAGGATGCTACCGATGTATCTATAAAACTTGAGGAATATGGAGAGACTATTAAGAATGATCACACTTATCATTCGACATTGCTGAATGATAAGTGTGATATTTATGTGAATACAATCAAAAGTGAAAATGGATCAGTGCAAGATGAGCATTCAATGAATGAAGACACTCCGCTGATAGAGCTAGAAGAATGCGCAAATATACTACGATCGGGTTCTGCTTCGCCATGCGGGGATGTAGAACCAATATGGCGCTTGCGAATGTCATCAAATGAACAATTACCTACTTACAGAGAAGAGGAGTTGATTGAAAATTGTCATTTCGAAAAAAAATGCAAGAAAAGGACCTACAATGAAGTTACAGAAGAATTCATATTAGTAGAAAACGTTACTTGTACAAGTTCAGAAAAAAAAATTAAATTATCACCTAAGAAATTAGGTTTCCAATATCAATTCAATAAGAAAAAAACACATATTTTCGAAGAAAGTTTAGAAACTCGAATTAGGAAATTGACTGCTAAAGAACCACTTAAATGTGATTTATGTGAATTTAAGACAACGCACAAACATATATTAATAAGACACATTCGTACACACACAGGTGAAAGACCATATAAATGTGAGTTATGTGATTATAAGGCAACACATGAAAATGCATTAGTATACCACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTATGTGAATATAAGGCATCTCATAAAAGTGCATTATTAAGACACTGTCGTACACATACAGGTGAAAGACAATATAAATGCGAATTATGTGATTATAAGGCAAAACAAAAAGGTTCATTAGTAGCACACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTTTGTGATTATAAGGCAACAGCAAAAAGTTCATTAGTATATCACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTTTGTGATTATAAGGCAACAGCAAAAAGTTCATTAGTATATCACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTATGTGATTATAAGGCAACACAAAAAGGTGTATTAGTAATACACATTCGTACACATACAGGCGAAAAACCATATAAATGCGAATTATGTAATTATAAGGCAACAGAAAAAAGTGCACTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTAATTATAAGGCAACAGAAAAAAGTGCACTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTAATTATAAGGCAACAGTAAAAAGTGCATTAGTAGCACACATTCGTACACATACAGGTGATCAATATAAACAATATAAATGTGAGTTATGTGATTATAAGACAGCACGAAAAAGTTTATTAGTAAACCACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTGATTATAAGGCAACAGAAAAAAGTGCACTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATGAATGCGAGTTTTGTGATTATAAGGCAAACGTAACAAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTGATTATAAGACAGCACGAAAAAGTGTATTAGTAAGACACATTCGTACACATACAGGTGAAAAACCATATCAATGCGAGTTATGTGGTTATAAGGCAATACAAAAAAGTGCATTAGCATACCACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCAACAGAAAAAAAATTACTGATAACACACATTCGTAGACATACAGGTGAAAAACTATATGAATGCGAGCTATGCGATTATAAGGCAACAGCTAAAAGTGTATTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTGATTATAAGGCAACAGAAAAAAGTGCACTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTTTGTGATTATAAGGCAACCGTAACAAGTGCATTAGTAGCACACATTCGTACACATACAGGTGAAAGACCATATAAATGCGAGGTATGTGATTATAAGGCAACACAAAAGAGTAGCCTAACGAGGCATCTTAATAGTAAACATAAAAGTAAATAA
Protein Sequence
MNDILCATCLATDRSLITLKSDIFGLLQYLMLQKGYDELKITDRVCWECFAQLNNVRKFQNKAFDSLRRLQEYCYKMEKQDNQSTYIKDTLVPVSGFKPVPLGLRSHCTATTPRLRIFDNICDIDNMIILIIFEYTNISCKTLTRVKLKNINIHNDLNESDEEYDEEDILELDQDATDVSIKLEEYGETIKNDHTYHSTLLNDKCDIYVNTIKSENGSVQDEHSMNEDTPLIELEECANILRSGSASPCGDVEPIWRLRMSSNEQLPTYREEELIENCHFEKKCKKRTYNEVTEEFILVENVTCTSSEKKIKLSPKKLGFQYQFNKKKTHIFEESLETRIRKLTAKEPLKCDLCEFKTTHKHILIRHIRTHTGERPYKCELCDYKATHENALVYHIRTHTGEKPYKCELCEYKASHKSALLRHCRTHTGERQYKCELCDYKAKQKGSLVAHIRTHTGEKPYKCEFCDYKATAKSSLVYHIRTHTGEKPYKCEFCDYKATAKSSLVYHIRTHTGEKPYKCELCDYKATQKGVLVIHIRTHTGEKPYKCELCNYKATEKSALVTHIRTHTGEKPYKCELCNYKATEKSALVTHIRTHTGEKPYKCELCNYKATVKSALVAHIRTHTGDQYKQYKCELCDYKTARKSLLVNHIRTHTGEKPYKCELCDYKATEKSALVTHIRTHTGEKPYECEFCDYKANVTSALVTHIRTHTGEKPYKCELCDYKTARKSVLVRHIRTHTGEKPYQCELCGYKAIQKSALAYHIRTHTGEKPYKCELCDYKATEKKLLITHIRRHTGEKLYECELCDYKATAKSVLVKHIRTHTGEKPYKCELCDYKATEKSALVTHIRTHTGEKPYKCEFCDYKATVTSALVAHIRTHTGERPYKCEVCDYKATQKSSLTRHLNSKHKSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01452555;
90% Identity
iTF_01452555;
80% Identity
-