Ttri010549.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992332.1:4468044-4480579[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.083 4.6 8.1 4.6 2 23 308 329 307 329 0.97
2 20 0.001 0.058 14.1 1.1 1 23 335 357 335 357 0.99
3 20 0.025 1.4 9.8 5.0 1 23 363 385 363 385 0.98
4 20 2.2e-05 0.0012 19.4 0.3 1 23 391 413 391 413 0.99
5 20 0.00059 0.033 14.9 0.9 1 23 419 441 419 441 0.99
6 20 0.00059 0.033 14.9 0.9 1 23 447 469 447 469 0.99
7 20 0.00043 0.024 15.3 0.2 1 23 475 497 475 497 0.99
8 20 0.00013 0.0074 17.0 0.5 1 23 503 525 503 525 0.99
9 20 0.00013 0.0074 17.0 0.5 1 23 531 553 531 553 0.99
10 20 8.2e-05 0.0046 17.6 0.2 1 23 559 581 559 581 0.99
11 20 4.8e-06 0.00027 21.5 0.8 1 23 589 611 589 611 0.99
12 20 8.3e-05 0.0047 17.6 0.3 1 23 617 639 617 639 0.99
13 20 0.0023 0.13 13.0 0.2 1 23 645 667 645 667 0.99
14 20 1.4e-05 0.00079 20.0 0.8 1 23 673 695 673 695 0.99
15 20 4.3e-05 0.0024 18.5 0.2 1 23 701 723 701 723 0.99
16 20 0.00042 0.024 15.4 0.8 1 23 729 751 729 751 0.99
17 20 0.0013 0.073 13.8 0.2 1 23 757 779 757 779 0.99
18 20 8.3e-05 0.0047 17.6 0.3 1 23 785 807 785 807 0.99
19 20 0.00041 0.023 15.4 0.2 1 23 813 835 813 835 0.99
20 20 2e-05 0.0011 19.5 1.5 1 23 841 864 841 864 0.98

Sequence Information

Coding Sequence
ATGAAAGATAGTTCCAAGGAGACTGGCAACATTTCCCCTTTGTGTAGCAAGCCTAATACATTAGCAGAAATAATTGCCAGCCTTCCTGTCTCCAGACCTCTCCGTCATCTGCTTGAACAACTCCTTAGTCAGGGATATGATGAATTGAAAATAACTGACCGAGTATGTTGGGAATGTTTTGCACAATTGAACAATGTTAGAAAATTCCAGAATAAAGCATTTGATAGTTTACGAAGACTACAAGAATATTGTTATAAAATGGAGAACCATCATGAGTACACAAATATTTCATGTAAAACATTAACTAGAGTAAAATTAAAAAATATAAACATACATGATGATTTGAATGAAAGTGATGAAGAATATGATGAAGAGGATATTTTAGAGCTAGATCAGGATGCTACTGATGTATCTATAAAACTTGAGGAATATGGAGAGACTATTAAGAATGATCACACTTATCATTCGACTTTGCTGAATGATAAGTGTGATATTTATGTGAATACAATCAAAAGTGAAAATGGATCAGTGCAAGATGAGCATTCAATGAATGAAGACACTCCGCTGATAGAGCTAGAAGAATGTGCAAATATACTACGATCGGGTTCTGCTTCGCCATGCGGGGATGTAGAACCAATATGGCGCTTGCGAATGTCATCAAATGAACAATTACCTACTTACAGAGAAGAGGAGTTGATTGAAAATTGTCATTCCGAAAAAAAATGCAAGAAAAGGACCTACAATGAAGTTACAGAAGAATTCATATTAGTAGAAAACGTTACTTGTACAAGTTCAGAAAAAAAAATTAAATTATCACCTAAGAAATTAGGTTTCCAATATCAATTCAATAAGAAAAAAACACATATTTTCGAAGAAAGTTTAGAAACTCGAATTAGGAAATTGACTGCTAAAGAACCACTTAAATGTGATTTATGTGAATTTAAGACAACGCACAAACATATATTAATAAGACACATTCGTACACACACAGGTGAAAGACCATATAAATGTGAGTTATGTGATTATAAGGCAACACATGAAAATGCATTAGTATACCACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTATGTGAATATAAGGCATCTCATAAAAGTGCATTATTAAGACACTGTCGTACACATACAGGTGAAAGACAATATAAATGCGAATTATGTGATTATAAGGCAAAACAAAAAGGTTCATTAGTAGCACACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTTTGTGATTATAAGGCAACAGCAAAAAGTTCATTAGTATATCACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTTTGTGATTATAAGGCAACAGCAAAAAGTTCATTAGTATATCACATTCGTACACATACAGGTGAAAAACCATATAAATGTGAGTTATGTGATTATAAGGCAACACAAAAAGGTGTATTAGTAATTCACATTCGTACACATACAGGCGAAAAACCATATAAATGCGAATTATGTAATTATAAGGCAACAGAAAAAAGTGCACTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTAATTATAAGGCAACAGAAAAAAGTGCACTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTAATTATAAGGCAACAGTAAAAAGTGCATTAGTAGCACACATTCGTACACATACAGGTGATCAATATAAACAATATAAATGTGAGTTATGTGATTATAAGACAGCACGAAAAAGTTTATTAGTAAACCACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCAACAGAAAAAAGTGCACTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATGAATGCGAGTTTTGTGATTATAAGGCAAACGTAACAAGTGCATTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTGATTATAAGACAGCACGAAAAAGTGTATTAGTAAGACACATTCGTACACATACAGGTGAAAAACCATATCAATGCGAGTTATGTGGTTATAAGGCAATACAAAAAAGTGCATTAGCATACCACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTATGTGATTATAAGGCAACAGAAAAAAAATTACTGATAACACACATTCGTAGACATACAGGTGAAAAACTATATGAATGCGAGCTATGCGATTATAAGGCAACAGCTAAAAGTGTATTAGTAAAACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAATTATGTGATTATAAGGCAACAGAAAAAAGTGCACTAGTAACACACATTCGTACACATACAGGTGAAAAACCATATAAATGCGAGTTTTGTGATTATAAGGCAACCGTAACAAGTGCATTAGTAGCACACATTCGTACACATACAGGTGAAAGACCATATAAATGCGAGGTATGTGATTATAAGGCAACACAAAAGAGTAGCCTAACGAGGCATCTTAATAGTAAACATAAAAGTAAATAA
Protein Sequence
MKDSSKETGNISPLCSKPNTLAEIIASLPVSRPLRHLLEQLLSQGYDELKITDRVCWECFAQLNNVRKFQNKAFDSLRRLQEYCYKMENHHEYTNISCKTLTRVKLKNINIHDDLNESDEEYDEEDILELDQDATDVSIKLEEYGETIKNDHTYHSTLLNDKCDIYVNTIKSENGSVQDEHSMNEDTPLIELEECANILRSGSASPCGDVEPIWRLRMSSNEQLPTYREEELIENCHSEKKCKKRTYNEVTEEFILVENVTCTSSEKKIKLSPKKLGFQYQFNKKKTHIFEESLETRIRKLTAKEPLKCDLCEFKTTHKHILIRHIRTHTGERPYKCELCDYKATHENALVYHIRTHTGEKPYKCELCEYKASHKSALLRHCRTHTGERQYKCELCDYKAKQKGSLVAHIRTHTGEKPYKCEFCDYKATAKSSLVYHIRTHTGEKPYKCEFCDYKATAKSSLVYHIRTHTGEKPYKCELCDYKATQKGVLVIHIRTHTGEKPYKCELCNYKATEKSALVTHIRTHTGEKPYKCELCNYKATEKSALVTHIRTHTGEKPYKCELCNYKATVKSALVAHIRTHTGDQYKQYKCELCDYKTARKSLLVNHIRTHTGEKPYKCELCDYKATEKSALVTHIRTHTGEKPYECEFCDYKANVTSALVTHIRTHTGEKPYKCELCDYKTARKSVLVRHIRTHTGEKPYQCELCGYKAIQKSALAYHIRTHTGEKPYKCELCDYKATEKKLLITHIRRHTGEKLYECELCDYKATAKSVLVKHIRTHTGEKPYKCELCDYKATEKSALVTHIRTHTGEKPYKCEFCDYKATVTSALVAHIRTHTGERPYKCEVCDYKATQKSSLTRHLNSKHKSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01452556;
90% Identity
iTF_01452556;
80% Identity
-