Ttri002735.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- MBD-R2
- Assembly
- GCA_905220615.1
- Location
- HG992312.1:3086925-3107643[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-17 1.1e-13 50.9 0.0 6 67 620 680 617 689 0.92 2 3 0.86 3.7e+03 -2.1 0.0 6 28 902 923 898 949 0.82 3 3 2 8.8e+03 -3.3 0.0 29 44 997 1012 975 1014 0.78
Sequence Information
- Coding Sequence
- ATGGCTGTAAAAATCTGTTGTATAGAGAAATGTAAATCGTCAACATTGAGAAAGGAGGATGATGGTGTCACATATCATAAGTTTCCTAATGATTCCAAGCTCAAATTGGTCTGGTTAGAGTCTACAAAGGTTGTACAGAAAAATGACTTAAATCTTTATGTATGCTCCAGGCATTTCTGTAAACTTGATTATAAGTTATATATGGACACAAAGTATATATTAAGAGCAGATGCTGTGCCATCAATTTTCCCCTGGAACATGGAGGAGTCAACAGTAAATGATAGTAAAATGGAGCCAGATAATTTGCCAACAAAACCAGAGGATTTTGGAGAATTTGAATTAAATGTAAACAAATCTAAGCAAATAGGCACAGGGAACAATGTTTGTGATCCACCTACGATTCTACTTTCTTCAAATAATTCTCAAATAAGTAATGTTAAAGATAATGGTGAAAAAGAACAAAGTACGATGGCGTTATCAGTGGGATCGAAAGTAGAGGCCAAAAATTTTGGTGGTGTATGGTTTTCTGCCGAGATAGGGGAGGTGGATTATGATGAACTGGAAGTCCTCGTACAATATGACGACATCAAAAAGCAAGATGAGTGGATTAGTGTAAGTAGTCCTCGCTTACGACCATACATTGAGAAGCCAAAGATTCCTTCGTCGCCTATAAATGGTCCTTCGTTAAACTATAGCTTCGAAATGCCTCTGAACAAAAGAAAACTAAAGTTTAAGGTCGGGGAAAGGTGTTTGGCAAAATGGAATAATGGAAAATTCGTTGCTACTATACAGAAAGAACTTGATGATGATCAGTATGAAGTTATGTTTGATGATGGAGTATTGTTGACATGTAAATTTTCAAAATTATCTAAACTCAAACAAGTTAAAAATGAATTTGAACCACAACCATCTACCAGTTCTGCAGCATTCACCCAGCTTTCACCATCAAAAACTCACAGACACCTTTTTGATCCATCAAGGGACTATTTGGGAACAAAGAGTGAACGTAGGGAGAAGAAACGGAAATTAAATATTAAGGCTCTGTTTAATATTGGCCAAACAAAGCGGAAATTCTCAAAGACTCATAAACAAAATACAAAGATTATTAGTATGAAGAAAAGTGTAGCACCATCAGCATCAGATAAAGCGAACTTGACGAGGGATATAGAAATGATAGAGAGGGATAGCCCGGAGCCTGAATGTAAACTGGAGAACTTTGAACAGATAAATGAGGAGAAACATGAAGAGACATTGTGTCAAATAAAAGAGGTAATTATTAAATTAGAAAAAAGCCTTAGTCAGAATAACTCTGAAGTAGAAAGTGTGGCCTCGCCAATGCTCACAGAAATTAAGGAGGAATACGTTAAGGAGGAAGAAGTTGATAAGGAAGAAGTCGATAAGGAAAAAGTTGACAAGAAAGAAGTTGATAAGGAAAAAGTTGACAAGGAAGAAGTTGATAAAGAAGAAGTTGATCAGGAAGAAGTTGATCCGAAAGAAGCTAAACCTAAAGATGTAAAAGTTAAAATAGAAATTGATCAGTTGCCAGCCGGTGAGATAAAAAAAGAACCAATTAAATTGGTTATAAGTTTGCCACCAGATCAGAAGTTTAAGAAAATGAGTAAGATTAGGAGAGCTAAGAAGTTAAGGATGATAAGAGAGAAGATGGTTAAGGAAGAGATGGAGAAGGTTAAAAGTGAATTAGAAGAGATGAAGAGACAAGTTTTGGAAATGAAACAACAGAGCTACCTATTGCCAGGCGAATGGTGCTGCAAATGGGTTGGCAACCAACCAGAGGGCGTTGTTTATGAAAATGAGAGGATTGATCATTCTAAAACAGTGCAAAGGCTCGCTATACAGGTGTTTGATAAGAGATTACCATCTGGATGGATTAAATTGTTAGTGAGGAGATCTATTGGTACTTCAGCTGGTAAATGGGATGTGTCTTTTGTATGCCCAGACGGTCGTAAAATCCATACGAAATCCGAAATGAGAGCTTATTTAGAGCTACAAAACAATCCTGATTTGAAACCGTATGAGTATGCACTCTTAGACTTTGGTATACATCGGAAACTGTCCCGGAGACTCGGTTGGGATGATGAGATACCAGTTGTGCCCGTGACGCATAAATCTAAGAAAAAGAAACGTGACAGGTCTGGGGAACCATCACGTAAGAAGCAAAAGCTGTGTGCTATTCCAGTTACGATTGAGACAACTGTTAATACACCTGGATTAAATGAATCAAGCTTTGTTCCACCTGTATTTGATAATTCAACATGGAAAGATGGATATGTTTACGTGGGCTCATTGAGAGCGGAAGTGATAAACAACATGTTGCGTTGTCCAGCCCACGGTTGCTTCAAGAATTTCCGCACGAATATACTATTACAAATGCATATAAAGTATTATCACAAGGAATTGATCGCTCTCATGGGTAGCACGCCCAATGTCGTTGATTTGGCTTCGGCGAGGACAGCTACAGAACCAGATGTACAATTGAAGACCAAATCCAAGACCAAATCGAAGCAAACTAAACGTGTGGATAGTGAAGCTTATTCAGATGCCTTACAAAAGGAAATGGGTTATCTTAGATATGAAGTAGAGAAAATACCTACGTTAGAGTCTCCTAGGTTAAGAAAGGCTCTTGTTGGAAAACGTAAAAGACCCAAAGTCTTACTGCCAGTGCGGAAAGCGGAAACTGCTGAACCAAAGGAAATGGAAGCGGAGTGCAGTTTTAGAGAGGAGTTTGAGAGGAAGTTTGGTCCATCCGCTGAGTGTATGAAGGAACTTGACTTTGAAACTGAAATCTCAGCTCATACAGTCTCCAAATCTGGCGACGATAGAAAGAAGATGGAGAGGTTTGGTAAAGGTGGCGTGTCAACAGCGAGTGAAGAAGACGACTTTGGTTCTGATACAATGTCGAGTTACCAACGCTCGGCAAGTCCCGAAGGCAAACTGGACCTTCGACAGGACAGGTTACAGGATCGAACCAAGGAAGGCGAGTTGTATTATACTTCTGAAACTGGCGAAAGGATCAAGATAGTTCACATGAAGCGGGAGGAGATAATAAATTGCCATTGTGGATTTAGAGAGGAAGATGGTCTCATGATACAATGTGAATTATGTTTATGTTGGCAACATGCGCTGTGTCATAATATACAGAAGGAATCAGAGGTACCAGAAAAATACACATGCAGTATTTGTTTGAACCCACGCCGTGGGCGTCGATCTCGTCGTTTCGTCCATGATCAGGATCGCTTGTATGAGGGTTTGCTTCCTGGCGCGGCTCCATCACAGAACTTGCGGCGAGCACATGAACTATCAGGCAATTTGCTGCGTATTGCAGACGCTTTACATGCGCTACGGGTGCAGAGATATGTGGCCACGCAAAAATATCATCCCAAACTTCAGTTGTGGTCTACTGATTGGGAGAATGATGACATGGGTGACAAGTATGATGAATATGATCTAAATAGTATTATTAAGGAGGATTTAGCAGACATTAGACTGCCCGGTGATGATGACAAGGGATTGTCACAGAGATCTGATGGTAGTCACTCTTTGGCCAATTTATTGGATGGCTCGGGCACACCGTTCGATCTGCCAATATCATCAGACTTTGAAAGATTGGCCAAATCAGTGCAAGAAGTAGATCTTACGCATGCCGCCGATGCTGACATCCAGGACAGTACATGCAGACAGAGACTTTTATTACATGTGCAGAAGTGTCAAGCACGAATTGACGCCAGACTTGATTCTATTGAAGCACAAGTTGCAGAGTTAGAATCTCAAGACCCATCCCTGGTTGACGACGAAACAGCAGACTACTACCCACGCACAAAACAAACTATACAAATGATGTTACGCGATCTGGACACTATGGAGGAACTGGGCGTTATAACATAG
- Protein Sequence
- MAVKICCIEKCKSSTLRKEDDGVTYHKFPNDSKLKLVWLESTKVVQKNDLNLYVCSRHFCKLDYKLYMDTKYILRADAVPSIFPWNMEESTVNDSKMEPDNLPTKPEDFGEFELNVNKSKQIGTGNNVCDPPTILLSSNNSQISNVKDNGEKEQSTMALSVGSKVEAKNFGGVWFSAEIGEVDYDELEVLVQYDDIKKQDEWISVSSPRLRPYIEKPKIPSSPINGPSLNYSFEMPLNKRKLKFKVGERCLAKWNNGKFVATIQKELDDDQYEVMFDDGVLLTCKFSKLSKLKQVKNEFEPQPSTSSAAFTQLSPSKTHRHLFDPSRDYLGTKSERREKKRKLNIKALFNIGQTKRKFSKTHKQNTKIISMKKSVAPSASDKANLTRDIEMIERDSPEPECKLENFEQINEEKHEETLCQIKEVIIKLEKSLSQNNSEVESVASPMLTEIKEEYVKEEEVDKEEVDKEKVDKKEVDKEKVDKEEVDKEEVDQEEVDPKEAKPKDVKVKIEIDQLPAGEIKKEPIKLVISLPPDQKFKKMSKIRRAKKLRMIREKMVKEEMEKVKSELEEMKRQVLEMKQQSYLLPGEWCCKWVGNQPEGVVYENERIDHSKTVQRLAIQVFDKRLPSGWIKLLVRRSIGTSAGKWDVSFVCPDGRKIHTKSEMRAYLELQNNPDLKPYEYALLDFGIHRKLSRRLGWDDEIPVVPVTHKSKKKKRDRSGEPSRKKQKLCAIPVTIETTVNTPGLNESSFVPPVFDNSTWKDGYVYVGSLRAEVINNMLRCPAHGCFKNFRTNILLQMHIKYYHKELIALMGSTPNVVDLASARTATEPDVQLKTKSKTKSKQTKRVDSEAYSDALQKEMGYLRYEVEKIPTLESPRLRKALVGKRKRPKVLLPVRKAETAEPKEMEAECSFREEFERKFGPSAECMKELDFETEISAHTVSKSGDDRKKMERFGKGGVSTASEEDDFGSDTMSSYQRSASPEGKLDLRQDRLQDRTKEGELYYTSETGERIKIVHMKREEIINCHCGFREEDGLMIQCELCLCWQHALCHNIQKESEVPEKYTCSICLNPRRGRRSRRFVHDQDRLYEGLLPGAAPSQNLRRAHELSGNLLRIADALHALRVQRYVATQKYHPKLQLWSTDWENDDMGDKYDEYDLNSIIKEDLADIRLPGDDDKGLSQRSDGSHSLANLLDGSGTPFDLPISSDFERLAKSVQEVDLTHAADADIQDSTCRQRLLLHVQKCQARIDARLDSIEAQVAELESQDPSLVDDETADYYPRTKQTIQMMLRDLDTMEELGVIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01452398;
- 90% Identity
- iTF_01452398;
- 80% Identity
- iTF_01452398;