Ttri014953.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_905220615.1
- Location
- HG992308.1:13981001-13987869[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-76 1.1e-71 241.8 28.6 1 298 4 280 4 282 0.90 2 2 1 2.1e+04 -5.5 9.9 130 174 290 331 281 351 0.54
Sequence Information
- Coding Sequence
- ATGAAGAGAGCTGAACAGCGGCTGGCGGCTCGTCGTGCTGCACGGGCGGAGGCGCGGGAGATTCGTATGCGAGAACTCGAGCGTCAGCAGAGAGAACAAGAAGACCATGCAGACAAGGCTTATGACATGTATGCCGAAACTGTGGGCAGACGTGCTCCCACGCGGCTGGCGGGGCCTGCCCTACATTCACCACGGCGGAGCTCAGAAGATTCGGCAGAAGATAGCCTTTCACTTAAAGATCTTAGGCATGACCTGAAAGAATATGAGGATAAATTTAGGAAAGCTATGATCCTGAACGCTCAGCTGGACAACGACAAGGCGGCGCTTGCGTACCAATTGGAATTACTCAAGGATAAGATTGAAGAGTTGCAGCAGGAGCATGCGCAGCTGCAGCGAGAACACAAAGATAAATGTTCAGCACACGAGCGATTGAAACGCGAACATACTTCAATGGAAAGAGAGCTGTGCGGTGCAAGGGAAGCCATAATGGCCCGCGATGCGGCGGCGGCAGAGGCTGGCAGAGTGTTCGTGCAGGCTGATGATGCGGAGCAACATGATGGCCATTGTCCAGTGCTGGCACTCGTCACCAGGGAGTCGGAGATATTGCTTAATGATGCCGGTGAAGGAACATTAGACGTCCGGTTGCAGAATTTATTGAACTCTAAGCAGGCATTAGAGTCCGAGGTTAGGAAATTGAAATTGCAATTGAATGAAGAGAGAACTGCAAGACAGAATGGTGTATCACATCCGAATGATGACTCATATGAGAATGAAGTGGAGAGTCTCCGCAAGTGCATATCGGAGACGAAGGGTCGTGCGGCGCGTGCTGAAGCTGAGGCGGCTCTACAGCATGCCGCAGTCGCTCGGTTGGAAGCACAATTGGCACGATTAAGAGCCGCACACGCTCAGAGGGACGAGGACGAGGAGGCGCTCAAGCAGGACAAAAGGAGGCTGCAGAGAGAGGCACGGGAAGCACTGAACCGAGTGGAGGAATTAGAAACGGAAAATAGTCATCTTACTAAGAGATTAGATAAACTTAAGAATGCAAAATCAGCGTTGTTGAAGGATCTTTGA
- Protein Sequence
- MKRAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAPTRLAGPALHSPRRSSEDSAEDSLSLKDLRHDLKEYEDKFRKAMILNAQLDNDKAALAYQLELLKDKIEELQQEHAQLQREHKDKCSAHERLKREHTSMERELCGAREAIMARDAAAAEAGRVFVQADDAEQHDGHCPVLALVTRESEILLNDAGEGTLDVRLQNLLNSKQALESEVRKLKLQLNEERTARQNGVSHPNDDSYENEVESLRKCISETKGRAARAEAEAALQHAAVARLEAQLARLRAAHAQRDEDEEALKQDKRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -