Ttri016464.1
Basic Information
- Insect
- Tinea trinotella
- Gene Symbol
- -
- Assembly
- GCA_905220615.1
- Location
- HG992317.1:13089865-13096847[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.2e-12 1e-08 35.0 0.0 4 39 161 197 159 201 0.90 2 4 2.8e-12 3.2e-09 36.6 0.5 5 39 216 250 213 253 0.93 3 4 2.1e-15 2.4e-12 46.6 0.2 3 45 269 312 267 312 0.96 4 4 2.8e-16 3.2e-13 49.4 0.0 2 38 320 357 319 362 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGGTACGGGGTGCTGGCTGTGAAAAGCGAGCCTCTGTCAGACGATGACGACACTAACTCAGCATATTGTGATTTTGGCACACAACATGCAATTCAAGTGAAGTTAGAAACACAAAATGGCGCCTTCCACTCCGTCCCGCATTTACTTAATCTACAGAATGCTGAAGTATTAGAAGCGGTCTCCCCAGCTGCTCCTTCAGCGACACCAGTGCTTGCGTCCAGACCACCTGGAACACAGGAACATGCCTTATTACAAACACTTGAATCACAACCGAGGAATTCAGCTTGTGCACCAAACCTGGATCACAGCATGCTGCTAAGGAGTGATGACTCATCAGAATTTGCGCCACTGATGCCAATTAAGGATGAACCACTATCTGAAGGAGAACAACAGCAGTTGAGTGGCGACGACACGAGTGACTCGTGCGGCGCAGAATGCACGAGCAGCAAACCAATTAAGTCATGGAACCAAAAGGACATGGAGAACGCACTCGAAGCACTCAGATCACACAACATGAGCCTCACGAAGGCATCATCAACGTACGGCATACCATCGACCACACTCTGGCAGCGCGCGCATCGTCTTGGCATCGACACCCCAAAGAAAGAGGGCGCAGCTAAGTCATGGAGTCAACAGCATCTGAGGGCAGCACTGCAGGCGCTCAGATCTGGTGCAATTTCAGCCAACAAAGCTAGCAAGGCATATGGTATACCTAGCAGTACATTATACAAGATAGCTCGGCGTGAGGGCATCCGTCTGGCAGCACCTTTCAATGCAGCGCCAACGAACTGGTCGTCAGCAGCTTTGGCACGAGCGCTCGCTGACATCAGAAGTGGAAGAGCATCTGTGCAGAGAGCCTCGGCTCATTATGGAATACCTACAGGTACATTATACGGCAGATGTAAGCGAGAGGGCATAGAGTTGTCTCGCTCTAATCCCACGCCTTGGTCAGAGGGTGCCATGGGAGAAGCATTGGAAGCAGTTAGGATTGGTCAGATGTCAATAAACCAAGCAGCAATACATTACAATCTACCATACTCATCGCTTTATGGCAGATTCAAAAGGTGCAAATTCACACCACAGCTACTCCATCAGATGCCCCACCAGAGTGTACCAGAAGGCGCAGAAGAAAGAAACATCGATTACACCAACTACACACACTCTCACATCACACATACGCCAGACCCACTCACACATCCATACTCCCACCAATTGCCATTAGAACATGACCATTATCACAATACATCGATGGTTAACAATGGTGAGATGACAACTCACGTGTATAGTGAACAAGCAATGTATTACAACCAGAATGGCATAATAACGAGTTGA
- Protein Sequence
- MPGYGVLAVKSEPLSDDDDTNSAYCDFGTQHAIQVKLETQNGAFHSVPHLLNLQNAEVLEAVSPAAPSATPVLASRPPGTQEHALLQTLESQPRNSACAPNLDHSMLLRSDDSSEFAPLMPIKDEPLSEGEQQQLSGDDTSDSCGAECTSSKPIKSWNQKDMENALEALRSHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSQQHLRAALQALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTNWSSAALARALADIRSGRASVQRASAHYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKFTPQLLHQMPHQSVPEGAEERNIDYTNYTHSHITHTPDPLTHPYSHQLPLEHDHYHNTSMVNNGEMTTHVYSEQAMYYNQNGIITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01453199;
- 90% Identity
- -
- 80% Identity
- -