Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.5e-17 1.1e-14 53.9 0.0 1 43 68 111 68 113 0.95

2 3 9.6 7.2e+03 -3.2 0.1 10 23 187 203 186 205 0.61

3 3 3.1 2.3e+03 -1.6 1.2 6 15 204 213 199 214 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.5e-17	1.1e-14	53.9	0.0	1	43	68	111	68	113	0.95
2	3	9.6	7.2e+03	-3.2	0.1	10	23	187	203	186	205	0.61
3	3	3.1	2.3e+03	-1.6	1.2	6	15	204	213	199	214	0.82

Coding Sequence: ATGTTACAAGTTGGTTATTCTCATGGTGTATTGGCTAAGCTTTTGGAGAATTCTCATGCCTGGCTGAGCCCATCAACTTCTTCCATAGCAGCAGACAGTTATCAATACCAGTTGCAATCGATGTGGCAGAAGTGCTGGAATACAAACCAAAGCTTAGTGCAAAATCTTCGCTTTAGAGAACGGGGACCGTTGAAGTCTTGGAGACCAGAGACTATGGCTGAAGCTATATTCTCCGTGTTGAAGGAAGGCTTGTCCCTGTCGCAGGCTGCGAGGAAATATGACATTCCGTATCCAACTTTCGTGCTGTATGCTAACAGAGTTCACAACATGCTGGGTCCCAGTGCTGATGGAGGCGCAGATTTGAGACCAAAGGGCAGAGGACGGCCACAACGCATCCTACTTGGCGTATGGCCAGACGATCATATAAGGGGTGTGATCAGAGCCGTCGTATTTCGCGACACGCACACTCCACATACTCCGCACATCAAGGAAGAGCCAATGCCTGTGTACTCCGCGTTAACGGATGGAATAGGAGTGCAAGCGGCATACGCTGGAGTAGCGGCGTGCAGCAATGGTCGCGAAGGAGGAGTGTCACCAAACGCTGCAGCAGCCGCCGCTGTTGCTGCCGTCGCCCATGGTCTTCGTCGTCAAATGTGCAATATGGTAGTCGCCGCCCAGCGCCCAGTCGATCATCCTGCGCATCTAACTATGCCACAACTGCCACTGCAGTCACCGCGGCTGCCGTCACCACTTTCTTCTGGTCTCGAGTCACCACTTTGCTCCCCACCACCACCAGGACATGCTCTCGAACCACCGAAACCGACCGATCCCTTCCGCCCTTTCATTTCGCCTCGCCCTGACAGCCGTTATGGAATTGAACGTGAAATGTCTGATATTCCTGAAATGGGTCCACCGAAAACACCGATTGCTATGATTGCTAAGAATGGCAAGGATCAGCTTTCCACACCGGTCTCAGTAAAAATGGAGCTGCCTCATCCGGAGGCTCGTGCAGAGAACATCTGA
Protein Sequence: MLQVGYSHGVLAKLLENSHAWLSPSTSSIAADSYQYQLQSMWQKCWNTNQSLVQNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDDHIRGVIRAVVFRDTHTPHTPHIKEEPMPVYSALTDGIGVQAAYAGVAACSNGREGGVSPNAAAAAAVAAVAHGLRRQMCNMVVAAQRPVDHPAHLTMPQLPLQSPRLPSPLSSGLESPLCSPPPPGHALEPPKPTDPFRPFISPRPDSRYGIEREMSDIPEMGPPKTPIAMIAKNGKDQLSTPVSVKMELPHPEARAENI

Sequence clustering based on sequence similarity using MMseqs2