Tpel005531.1
Basic Information
- Insect
- Tinea pellionella
- Gene Symbol
- -
- Assembly
- GCA_948150575.1
- Location
- OX411256.1:282997-288258[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-11 1.8e-08 34.0 0.0 4 39 162 198 160 202 0.90 2 4 3.7e-12 2.8e-09 36.5 0.5 5 39 217 251 215 254 0.93 3 4 2.6e-15 2e-12 46.6 0.2 3 45 270 313 268 313 0.96 4 4 6.6e-17 4.9e-14 51.8 0.0 2 38 321 358 320 363 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGGTACGGAGTGCTGGCTGTGAAGAGCGAGCCTCTGTCTGATGATGATGACACCTACATAGCGTACAGTGAAATAACAACAACACAAGCCATAAGAGTAAAATTAGAAGCGCAGAATGAAAGCATTTTAAATTCCGTCCCGCATTTACTTAATTTACAGCATGGCGAAGTTTTGGAAGAGGTGTCTCCAGCCGCACCTTCTGCGACTCCTGTCCCTGTGTCGAAACCCCCGGGAATACAAGAACCTGCTCTATTACAGACGCTTGAACCGCAACCTAGGAACTCGGTTTCCACATCAAGTTTGGATCACTCCATGTTGCTGAGGAGCGATGATTCATCTGAATTTGTGCCACTGTTACCTATCAAGGATGAACCACTATCAGAAGGAGAGCAACATCAGTTAAGTGGTGACGATACAAGTGACTCATGTGGTACAGAATCAACAACGAATAAAGCCGTTAAATCATGGAATCAGAAGGACATGGAAAACGCGTTGGAAGCATTAAGAACACACAATATGAGCCTCACTAAAGCGTCATCTACATACGGTATACCATCAACAACACTCTGGCAACGTGCACATCGTTTAGGAATAGACACACCGAAGAAGGAGGGCGCTGCTAAAACCTGGAACCAACAACATCTGAGAGCTGCATTACAAGCATTGAGATCTGGTGCTATATCTGCCAATAAAGCCAGCAAAGCATACGGTATACCAAGCAGCACCCTTTACAAAATAGCACGTCGTGAAGGCATCCGTTTGGCCGCTCCATTTAATGCAGCTCCCACCAACTGGTCATCAGCGGCACTCGCCAGAGCGCTCGCTGACATCAGAAGTGGAAGAGCATCCGTGCAAAGAGCATCAGCACATTATGGAATACCTACTGGTACACTATATGGAAGGTGTAAGCGAGAAGGCATAGAGTTGTCCCGCTCTAACCCCACACCATGGTCTGAAGGTGCAATGGGGGAGGCACTAGAAGCTGTTAGAGTTGGTCAAATGTCAATAAATCAAGCTGCAATACATTATAACTTACCATACTCATCACTCTATGGCCGCTTTAAAAGATGCAAGTTTCAACCACAGCTACTCCATCAAATGCCACAACAAAACATTGCAGAAGGATTAGAAGAAAGACACCCCGATTACATACAATACCCACACGCAATTCATCACACACCCGAACCGTTGACACACCCATACTCGCATCAATTACCGTTAGACCAATACAATACATCGATGCCTAACAACGGTGACGTCACTAACAATGTCTATAGTGAACAAGCGATGTATTACAATCAAAACGGTATTATTACTAGCTGA
- Protein Sequence
- MPGYGVLAVKSEPLSDDDDTYIAYSEITTTQAIRVKLEAQNESILNSVPHLLNLQHGEVLEEVSPAAPSATPVPVSKPPGIQEPALLQTLEPQPRNSVSTSSLDHSMLLRSDDSSEFVPLLPIKDEPLSEGEQHQLSGDDTSDSCGTESTTNKAVKSWNQKDMENALEALRTHNMSLTKASSTYGIPSTTLWQRAHRLGIDTPKKEGAAKTWNQQHLRAALQALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTNWSSAALARALADIRSGRASVQRASAHYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKFQPQLLHQMPQQNIAEGLEERHPDYIQYPHAIHHTPEPLTHPYSHQLPLDQYNTSMPNNGDVTNNVYSEQAMYYNQNGIITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01453199;
- 90% Identity
- -
- 80% Identity
- -