Tshe029887.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- pnr
- Assembly
- GCA_902151425.1
- Location
- CABFVX010002856.1:2462-19493[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6 1e+05 -5.9 3.4 20 26 12 18 10 18 0.78 2 2 8.4e-17 1.4e-12 49.4 5.1 1 35 448 481 448 482 0.98
Sequence Information
- Coding Sequence
- ATGTGCAGTTTACcgccgaaattttatgaactgTGTCGTCTTTGTTTATCCTGTGATGGTGTGAAATCATCTATTTTCGATGACGAAGGAATTCAGCGTAactttccatttaaaataatgacgtGTCTCTCTATATTGGTCTCTGAGCGGGATCTTCTGCCGCCTTCGATATGTCACCGCTGCGTGTACAAGCTGGACGTGTTGTACGACTTTAGGGAAGTGTCCAGGAAGTCTGATCTCATCCTCAAACAATACCTAGGCCTAAGTTATTCTGAGCGCATCGGCGGTGGCGTTCCGGACCAGCGGAAGCAGCCGGCATGCTCGCCCGACAGCAGTAAGGGCAGGCCCGAGGAGCCCATGCGCTCCTGTAAGAACGGGGACGTGTTGGCCATGGAGAAGGAGATGCGGGAGATGGCGGAGACGGAGGCCCTGGAGCTGAGGCTGAAGCGGGAGCCGTCAGAGGAGGATGAGGAAGAAGATATGTTGAACGGGGAACAGGACAAGGGGCAGGTGAACGGGATCTCTCCACACCGGGACAAGGGGGACTCTGGAGACGAAGCGGAGGAGGACCACTCGGATATGTCGGACTGTGAGAGTGGGGGTTTGTCCGCGGAGGTGAAGGGAGGCGAGTCCACCACATCGCTACAGGGCGAGGGTCGACTGGTGATCGACCAGGACGAAGGGGTCAAGGAGGAGCCCCAGGAGGAAGGGGAGGAGGTGGCGACACATGAGCGCGGCAGCCCTCACCCCTCTTCTGACAAGGACAGCGAGTGTGGCTCTAGTCCCAGAGACTGGCACCATCGCACCAGTCCGATCACCAGTAACCTTGGGAGTAACGGGGGCGGAGGGGAGGCCAGCAACCTCCTGAGGACACTAATCTCCTGCCGCAAGCTGGGCATTCCGCCTATGGAGGCTGCCGCCAACAACCGACTCGCCCCGATGGCCTCGTCACTGCAGCACTCGCTCAAGTCCCGCAGCAAGCTGTATGCGGCGATCCACGGCTCCCCGCTTGTCCCTCCTCTTTCGTCGGAGGGCCCGCATTCTCCCGCCGTCGTGTTGGGCAACCGGACCAACCTCCTGCAGAGCTCTGACGAAGGGTCTCCCCCTGGTGCCCTGTCCATGGTCATCAAGTCGATAGACGCCTGCTCCATGAACAACAACGTCCTTGCTGTGGCGAGTAAGCATGATAGCAGCAGGAGGAAGCAGAGCTTCCCTTCCAAGGCCGACCCTAGCCTCCAGACTGAGTCTCTGTACGTTCCCGACTTCACCGGTGGCAACCCGTGGTGCAATATCTCCTCCAGCAAGTCGGGAAGGTTGGCGACACGGCGTGTGGACCTGTCTTGCACCAACTGTGGTACCATGACGACAACCATATGGCGGCGCAACATGAAGGGAGAGATGGTGTGCAACGCCTGCGGGCTCTACTACAAGCTGCACGGTGTCAACCGGCCAGTCACGATGAGACGTGACACTATCCACACGCGCCGTCGGCGCCCCAAGGGGGAGAAGAGTAGCGGCCGACACAGAAACAAAGGTACCAATAGTGGCAGCAGCAGTAGTGACGATCCGGTGGACATGTTGGCAGCCCTTCGCAGGCAGATCCAGCCCCACCTCATGATGGCCCTCCAGTCTGTGCCCGAGTCCTGCACGCCCCCTTCAAGCATGTCTCTCGCCGCCGAGGTGAAGACCGAGCCGGTCGACTCGGAAGAGGAAGAAGAGGAAGACGAGGACGGGGCGGACGAAGACATGGCAGACCTTCCTTTGAACCTTGTGTCCACTACGCTGGCCGAACCGACCCAGTGA
- Protein Sequence
- MCSLPPKFYELCRLCLSCDGVKSSIFDDEGIQRNFPFKIMTCLSILVSERDLLPPSICHRCVYKLDVLYDFREVSRKSDLILKQYLGLSYSERIGGGVPDQRKQPACSPDSSKGRPEEPMRSCKNGDVLAMEKEMREMAETEALELRLKREPSEEDEEEDMLNGEQDKGQVNGISPHRDKGDSGDEAEEDHSDMSDCESGGLSAEVKGGESTTSLQGEGRLVIDQDEGVKEEPQEEGEEVATHERGSPHPSSDKDSECGSSPRDWHHRTSPITSNLGSNGGGGEASNLLRTLISCRKLGIPPMEAAANNRLAPMASSLQHSLKSRSKLYAAIHGSPLVPPLSSEGPHSPAVVLGNRTNLLQSSDEGSPPGALSMVIKSIDACSMNNNVLAVASKHDSSRRKQSFPSKADPSLQTESLYVPDFTGGNPWCNISSSKSGRLATRRVDLSCTNCGTMTTTIWRRNMKGEMVCNACGLYYKLHGVNRPVTMRRDTIHTRRRRPKGEKSSGRHRNKGTNSGSSSSDDPVDMLAALRRQIQPHLMMALQSVPESCTPPSSMSLAAEVKTEPVDSEEEEEEDEDGADEDMADLPLNLVSTTLAEPTQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445331;
- 90% Identity
- iTF_01445331;
- 80% Identity
- -