Tshe007065.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000361.1:289083-303878[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.4 6.4e+02 3.5 0.8 2 23 792 814 791 814 0.89 2 9 0.099 27 7.9 2.1 1 20 1161 1180 1161 1184 0.94 3 9 0.89 2.4e+02 4.9 1.7 1 23 1191 1214 1191 1214 0.79 4 9 8.6e-06 0.0023 20.6 0.6 1 23 1220 1242 1220 1242 0.94 5 9 0.00082 0.22 14.4 0.3 2 23 1254 1276 1254 1276 0.91 6 9 3.1e-05 0.0085 18.9 2.7 3 23 1284 1304 1282 1304 0.96 7 9 0.0033 0.91 12.5 2.9 1 23 1310 1332 1310 1332 0.98 8 9 0.013 3.5 10.7 3.2 1 23 1338 1361 1338 1361 0.98 9 9 0.63 1.7e+02 5.3 0.4 1 23 1370 1392 1370 1392 0.96
Sequence Information
- Coding Sequence
- ATGTGTTTCAACTACCCTCACGAAGAAGTCAAACCTTCAAAGAATTCAATACCAACAAAGTTGACATCAGACCACATTCATTCTAAACTTTCAACACCTTTGTTTTCTGAGTCTTTTGACATTAATACTAAACTCTCTCACTCTCCTCCGAAGTCTCATGCACCAGAGCTAAATCATTTAAGCACACACACCCTATCCAAATCAAGTCCTCTTATCTCTGGTGGATTATCTTTAGAAAACATATCCCTAGTGTCTGATTCATTTAGTCAAGATGGTAGACATACATCCCTTCTCCATTCTCTTCCACATGTATCGGAAATTCCTCGACCAGGGAACATTTTGCCAACTCTATTGTCAGCTTCTCGATCTGATTCTAAAACTCTCCCATCTTCATCTTGCCCCTCAGATGTCGCCACAACATCCAGCATTATCACTACAATACCGTTTAATAGTCGGCCTGGTAGTGCACCTATACTTTCGGAAATAATATCGCCCCTTCAGACCACCGGGGGTTCTCCTCTCAAAGTTATATTACCTGCCACAACTCTAACAGGTAATGGACAACCTTTCTTGCCCTCGGTTTCACCTAGAGAAGCTGCCGTCACTGTGGTTTACTCAGCGTTATCAAAAGGTGAATGTGCTAGTCAAACTCACCAGACTCCGATTTTATTATCATCTATAATGGATGTGAAATCAAATTGCTCAAATGATTTGAATTCTATGCATAGGCAAATAGATTCTAACAATAGCATGAGGAAAACCTCACAAACTTTGCCATCTCATGTTCTTTGTGTTGATCACACCAGTGTGATAGAAGGTGATGTTGCACCTTCTCTCCTTAATAATAGGATGATTCCTGTTAAAGTTTGTGATAGCTCGAATATTACATCTAATGTATCGCAAACTATAACTTTACCATCTCCCTCAGCCCAAACAGTTAAACCTTGCACCAACAGATCGTTGATGGATATAAACTCGGGCATATATATTCCTGTTTCGAGTAAAATGCTTGATTCCAAACTTGATAGTCTTACAGCACTTAGTGATAACAATCAAATCATTACCATCCCGCTGACTTCTAGCACAATCTACAGTCATTTGCCAATTTCTATACCGGTTTCATCAAACTCATTATCGTTTCCTATTCTGTCTTGCACTTCAAACTCTTCAGCTCAAGATAAAATTACACTTTCATCAAACCACAACTCATTGCAGACTCAAACTCATGATTCAATCACTTCAACCACAGATAATGACAAGCAAAGCTATGCTCAGAAAATATCTGAAATATCTCCCACCACAACACACTCTTTAATTTGTAACAATATTCATGACAATGCTAGTTCAGATTCTCTTACCTCCTCACTGACAAATGATCTACCGATCACTTCGGGCACAAATACTATCGCTATCACATCCAATTCTCTCATCATATCTTCGTCTTCTTCATCGGTGCTAACCACTTCGGAAATAAATTCATCGACATCACTGGACTCCAGTTCCTTCGCTGTGCAGTCGCCGGCAGAGATTCTGTCGCAGCTTTCCAAAGCGGGAGTTTTGCCCGCTATGAGCAGCAGCCAAGTGTCTTCGGTCTTGTCAGATCTGGGGCCGGACAATGACCTTGATCTTGACGGCGACTCAGCACATCATGAACTCATGTCACACCAGATACATCTGTCGGACTCCCCAGATAAAGTTTCTTCTCTTGCTCAAGCCGAAGACTTAGAACTCGGGCATACAGTGTCTAGCGAAGATACCCTCATAGTGCAACATGTCATGCACATGTTGAATCACCAACATGAGCAAGCACTACCACCTAAACCCCCCGATATTGATCCTACCACTCACGATATCCTCCACAACTCATCAGGCCTCATCGATCACTCGGAGAATACAAACCCACTGCCACCAATATACAAAGCAAACTCTGTCAGCAGGGATATCCCACCCAACATGCGGCTCGTCAACACTCCGATGAATGAACTTGGAAGTCAAGAGCACCGTTCATTGCGACAGTATGTCTTTATCAAGGAAGAACACACCGAAGCCATACTGAATTCAAGGAATAAGTCTGAAATAATTGAGGGGAATAAATGTGTAGATATTAGCAATATTTTGTGTCAACATAAAGAGTCAATTCAAGATCAAGAAACCATGTCAGAATCTTTGAGttctaaagaaaacaaaaaacgtAAACGTGGGGTGGATGCTCTTGAACAACTtgattttaccaattttattgAAGAGGTCTGCACGTTCAAGTGTAAGTTCTGTTTCTTTCTAAGTCTCAAGAAAGAGGGTGTATGTTTACACCTTAGGCAAGAACACTTGGCCCAAATGACTGGTGGCAGAGGGGAGTTAAAACGTAAACTCAAGTGCCCCGGGTGTCCAAATGTGTTTTTCTGTATTAAATCTCTGAGGGTGCATTTATCGCAAGATCACCAAGTAGGAGATGCAGAATTAAAAACCATTGTAGAGACTGTTGTAAATGGGACAAACCAAGTAAAGGtcataaaaaagaaaaccaaaaaGAAACCAAGAAAAGATCAAGATTGTGAAAGTGTGGATGAAGTGGATGGTGTTGAGgacaaaaacaatgaaaaaaccCAGGACGCTAGTGTGGATAGTCAAAATAAAGTGCCAGTCATAGATATCGACAGGACAGCATCACCTCTTCCGTTAGTTTCCTCCGCCAGTGAACTGCCTGGGATAAGAATCATAGATGTTAGGGGGTCAGGAATGTTGGCCCCGAGTCCTGAATTAAACCCTGGTACGGATGAGAGTCTATCTGAACTACCGGCTTTAGAACTCGGCATGAGAGCGGAGATGTCGGTTCTTGACCAGGTCAGTAAACTCACCAAAGTAAATTCAGATGTTTTCATGGGTAGCTCTAGACCTGAAAGCGTTGGCAGCTTATGTGGCTACACGGAAGAACCGGGTAAAATTCGTGTGCGCAACCTGAATAGTGAAAGTAGTGTGGTGAACAGTATGGACGAGAGGGACTCTGGCCATGTTGCTCAATTGCGTGGTTTACAGAACGACCTTGGAAGAGACAAGGATACACCCGGTAAGATCAGCGACATTTCCGATGATGAAGCGCGGGAGGATGGTTTGGTGATTGATGATGACTCCTTTCTCCACCAAAAGAAATTGTGCTCTGTGGATAGTTCTCAGTATGAGGATATCAAGTCTGAGAGATGTAACAGCAAGTACGAAGCCGGTATTTGCAACGAACATGAGAAGTCCCAGGATATTAAGAAACCTGTTCCGATCACAACTGTGAACAACATCCAGCCAGCTTTTGTCAGGAAGCGGGGCCGACCCAAAGGTTCAAAGAACTCGGTGGTTAATGGCACCAAGACCGAGGGGGCGAAATCAGAGAAAGGTCTTGGATATAGATGTGACGTGATGGGTTGTGCGGTACGGCTCCACTCCCATGACAAGATAGAGTACCACCGACGGTGCCACCAAGAGGCAGTCTTCCAGTGCCCAGAGTGCTCACACTCTACTTTCCATTGGAACTCGCTGAGCAGCCATCTTTGGCGAGGGCACGCTATCGACATGGAACTGTACTCTTGCAACCAGTGTGATTATAAGACCATTAGTCACAGCAAGTTGGTCAACGTGCACTCCCGTATTCATGGTGATGAAAGGCCATTCCTCTGTGATATTTGTGGAAAGGGTTTCAAGAATCCAAAACAACTCAGAAACCACAAGGTGACCCACTCGACAAAACAGAAGCCTGTGATTGCCAAGGGGGAATGTGACATCTGTGGGCGGACATTTGGTAACCAGCGCATGCTGAGGCTACACAAGGACAACGTGCACAGCCGACTACGACCCCACCTCTGCAATTATTGCGGCTATTCGGCCTCCTCAAGATCCACACTCAAGATGCACATGAGGACACATACCGGAGAGAAGCCATTCCAGTGCGAAGAGTGTGAGTATCGCACAGCCGACCATAACTCTCTGAGGCGGCACAAGATGAGGCACTCGGGAGACAAACCTTACAAGTGTCCACATTGCGCCTACGCCTGCATCCAGGCCAACACTTACAAGGCGCATCTCAAGAGCAAACACCCAGGTCTAGAGTCCAGCTTAATGTTCAGTTGCTGGATGTGTTCGTTCAGATCTGTGAAGAAGGAAAACTACCTGGCTCATGTAGCCAATCATGAAACAGGAGCGATCCCTAATCGAAGGGTCACCCACTCCCCTCAGGTCTCTGAAGCTGCTCCAAAGAAGTCTGCTAAGGAATCGCCAGTGATCATAGATCTGACCTCCCTTCATGATGTCACAAGTTCTTCTGACAGTCAGGAGGCCTTTCCAGACTCTAACGGTGTAGAAGAAGACGGTGCTGAGAATATTGAGCTGGTTTACTCAAGTAGTTCTGTTGTAGAGGAGCTGATACAGCAAGCACCCAGCGGTGTGGGTAAAGACGGTGAGACATTCGTAGTGGAGATGGAGCCCCACTCGGTGATTCATCTTGCCCAGGCTTCGTCGCTGTTGTCTTCTAGTAACTGCCAGACACTCAAGTCCTCCGCCAGCCTCGACGGGATGATCATGATTCCCCTGAGTCCTGAGTTTGAGGTGGAAGCGGAAGAGATCACCGGAGACATCAGAGAGTCTCAAGATCTTAAGTTCAAGAGCCTACCTCAAGAGTTCAAGAGCCTGCCTCAAGACCTCGGTTTCAAGGTTATGGACGACACGTAG
- Protein Sequence
- MCFNYPHEEVKPSKNSIPTKLTSDHIHSKLSTPLFSESFDINTKLSHSPPKSHAPELNHLSTHTLSKSSPLISGGLSLENISLVSDSFSQDGRHTSLLHSLPHVSEIPRPGNILPTLLSASRSDSKTLPSSSCPSDVATTSSIITTIPFNSRPGSAPILSEIISPLQTTGGSPLKVILPATTLTGNGQPFLPSVSPREAAVTVVYSALSKGECASQTHQTPILLSSIMDVKSNCSNDLNSMHRQIDSNNSMRKTSQTLPSHVLCVDHTSVIEGDVAPSLLNNRMIPVKVCDSSNITSNVSQTITLPSPSAQTVKPCTNRSLMDINSGIYIPVSSKMLDSKLDSLTALSDNNQIITIPLTSSTIYSHLPISIPVSSNSLSFPILSCTSNSSAQDKITLSSNHNSLQTQTHDSITSTTDNDKQSYAQKISEISPTTTHSLICNNIHDNASSDSLTSSLTNDLPITSGTNTIAITSNSLIISSSSSSVLTTSEINSSTSLDSSSFAVQSPAEILSQLSKAGVLPAMSSSQVSSVLSDLGPDNDLDLDGDSAHHELMSHQIHLSDSPDKVSSLAQAEDLELGHTVSSEDTLIVQHVMHMLNHQHEQALPPKPPDIDPTTHDILHNSSGLIDHSENTNPLPPIYKANSVSRDIPPNMRLVNTPMNELGSQEHRSLRQYVFIKEEHTEAILNSRNKSEIIEGNKCVDISNILCQHKESIQDQETMSESLSSKENKKRKRGVDALEQLDFTNFIEEVCTFKCKFCFFLSLKKEGVCLHLRQEHLAQMTGGRGELKRKLKCPGCPNVFFCIKSLRVHLSQDHQVGDAELKTIVETVVNGTNQVKVIKKKTKKKPRKDQDCESVDEVDGVEDKNNEKTQDASVDSQNKVPVIDIDRTASPLPLVSSASELPGIRIIDVRGSGMLAPSPELNPGTDESLSELPALELGMRAEMSVLDQVSKLTKVNSDVFMGSSRPESVGSLCGYTEEPGKIRVRNLNSESSVVNSMDERDSGHVAQLRGLQNDLGRDKDTPGKISDISDDEAREDGLVIDDDSFLHQKKLCSVDSSQYEDIKSERCNSKYEAGICNEHEKSQDIKKPVPITTVNNIQPAFVRKRGRPKGSKNSVVNGTKTEGAKSEKGLGYRCDVMGCAVRLHSHDKIEYHRRCHQEAVFQCPECSHSTFHWNSLSSHLWRGHAIDMELYSCNQCDYKTISHSKLVNVHSRIHGDERPFLCDICGKGFKNPKQLRNHKVTHSTKQKPVIAKGECDICGRTFGNQRMLRLHKDNVHSRLRPHLCNYCGYSASSRSTLKMHMRTHTGEKPFQCEECEYRTADHNSLRRHKMRHSGDKPYKCPHCAYACIQANTYKAHLKSKHPGLESSLMFSCWMCSFRSVKKENYLAHVANHETGAIPNRRVTHSPQVSEAAPKKSAKESPVIIDLTSLHDVTSSSDSQEAFPDSNGVEEDGAENIELVYSSSSVVEELIQQAPSGVGKDGETFVVEMEPHSVIHLAQASSLLSSSNCQTLKSSASLDGMIMIPLSPEFEVEAEEITGDIRESQDLKFKSLPQEFKSLPQDLGFKVMDDT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449006;
- 90% Identity
- iTF_01447997;
- 80% Identity
- -