Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010005705.1:1567-11088[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.073 20 8.3 2.3 2 20 220 238 219 240 0.93

2 14 5.6e-05 0.015 18.1 0.6 1 20 249 268 249 269 0.96

3 14 0.01 2.8 10.9 4.6 1 20 277 296 277 299 0.95

4 14 4.1e-06 0.0011 21.7 0.6 2 23 306 327 305 327 0.97

5 14 0.0004 0.11 15.4 1.6 1 23 561 583 561 583 0.96

6 14 0.0046 1.3 12.1 0.2 2 21 592 611 591 612 0.93

7 14 0.0017 0.46 13.4 4.3 1 20 661 680 661 683 0.92

8 14 0.069 19 8.4 0.6 1 23 688 711 688 711 0.92

9 14 0.00015 0.04 16.8 0.6 1 23 717 739 717 739 0.96

10 14 0.019 5.2 10.1 4.9 1 23 747 769 747 769 0.98

11 14 0.0006 0.16 14.8 0.7 3 23 777 797 775 797 0.97

12 14 0.00078 0.21 14.5 0.8 1 23 803 826 803 826 0.94

13 14 0.0033 0.88 12.5 0.3 1 23 839 861 839 861 0.95

14 14 0.0011 0.3 14.0 0.0 1 23 952 974 952 974 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.073	20	8.3	2.3	2	20	220	238	219	240	0.93
2	14	5.6e-05	0.015	18.1	0.6	1	20	249	268	249	269	0.96
3	14	0.01	2.8	10.9	4.6	1	20	277	296	277	299	0.95
4	14	4.1e-06	0.0011	21.7	0.6	2	23	306	327	305	327	0.97
5	14	0.0004	0.11	15.4	1.6	1	23	561	583	561	583	0.96
6	14	0.0046	1.3	12.1	0.2	2	21	592	611	591	612	0.93
7	14	0.0017	0.46	13.4	4.3	1	20	661	680	661	683	0.92
8	14	0.069	19	8.4	0.6	1	23	688	711	688	711	0.92
9	14	0.00015	0.04	16.8	0.6	1	23	717	739	717	739	0.96
10	14	0.019	5.2	10.1	4.9	1	23	747	769	747	769	0.98
11	14	0.0006	0.16	14.8	0.7	3	23	777	797	775	797	0.97
12	14	0.00078	0.21	14.5	0.8	1	23	803	826	803	826	0.94
13	14	0.0033	0.88	12.5	0.3	1	23	839	861	839	861	0.95
14	14	0.0011	0.3	14.0	0.0	1	23	952	974	952	974	0.98

Sequence Information

Coding Sequence: ATGGATGCTGAAGTGACAGTGTGTGAAGAGGAACAAATTAATCCTATCGTCGGCCCGTCTTTTAGTGGACATTGTTCAAATTCGGTACAAAACGATGCCTTACTTAATTTTGAAAGCAGTGCAATGGTTGTGTATCAAGCAGATGTTGAATTGAGTGAAGACATTTCTACACCACAAGTGAAATGCTTAGAATTTTACCATGACAGTGGAGAATTGAATCAGGTGGACCTACCATCACTAAGTAGCTCTGCTACTTATTTAGGAAACGTTAGTGCTGAGTTTGGGACTACTTCACACGTTAACAGCATAGGAATGTATGTGGAAACGGAACAGAAGGACACTCACTCAAATTCTcatgacaataataatttcCCAAAAGCTTAccaagataatattttgaaagtagATATTAATGTAACTTCCAAACCTGAAGGTTCCATCACATATCAGAATAACAATGTCAAGGAGAGTGTTTTAGAGGAATGTGATCAAGAACAAACATTTTATCACCATCGGTCTAACGTGACGGACAACGTTACGGTGAAATCTGAAAACATTGAGCCTTCGACAACTACAGATGATGAGAGTATGGCCGTGGAAGCCCTTCAGCAGCTCGGAGGTGGGGACCTACTATATTCAAACCTCAACTCACTCTTGCATTGCTACATCTGCGGCTCAAAGTTTCACTCCAGAGACAGCTTTCAGAAGCATCTCTCCTTGTGCGCCGAGACGGGGATGGCCGCTCACACTTGCAGCGTCTGCAGGGAGACCTTTACACGCAAGTCAGACCTGGAGAACCACCTAGTGTGTCACCAGGTGGACAGGCCCTATGCCTGCAAGATATGCAGTACCTTGTTCTGCAGGAAGGCGGAGCTCCAGAATCACATGACATGCCACAACGTCAACAGGCCTCTCAAATGCCCGCAGTGCGGAACCGATTTCCAACGGTTGTCGAGTCTCACCAATCACATGAAGATACATAACCACCCCCCGGGTAAAGCCGTTGGTTTGTTTGAACTCCGGTCAGATGGCAAACCTGTATCAAATCCGTCAGCACAGGAGGGGAAATTAAAGTATGAAGAATCGTCAGCAAGTGTCAAACCTTTACAAGGTATACAACCTTTGACGACGTTATCCTTGGTCACCACCCCTTGTTTTAGGCTATTTAACCAACCAAATCTTAATCAAACAGGACGCGACTGGGacacaaattttcaaattatttcaaacaccTCGGAGGTTTTAACAACGGAAAATAAGACTTCGAGTCTGTTTTTAGGAACTTCTGTAAGTCACGTGAATACTACAGATACCAGTTTGGTGAGTCGCCCGACGGAAGAAACGTCCTTTTCACCAGCTTCAAAAGTTGCGGTCCTACCGATTAACAGTTTTAACTTTTCTATGAACCAAAGTGTCGATGAAAATTCTTTACACAACATTTGTAATTCAACCAATCACACATCAGGACAACTTGTAAATTGTAGTAAAATTGAGCGTTTGAATACTCAAATTGATAAACCTCAAGGTGGTGATAACTTAGTTTCAAAATCAGACTCAAATTTCTGTTCTGTGAAAGTCGAATCTATGCCCTATATCATGTCGCAGGGATGCCATCCTGAAGAAATGTTTTCGACTCAAAGCCCCGAGCAAGACTTACCCAAAGCCGAGGATAAACGCCCCCACATATGCCGGCATTGCGGTACGGCCTTTGCCCGGATCAAGGCCCTCCAGTCGCACGTCCGCCTGCATGAGGACAATTGGGGGGCCCCGTTGTACTGCAAGAAATGCGAGGAGAATTTCCCCGATGAAATTTCTCTTAACCGACATCAGTTGAGATGCACCGGACCGATGACTCTGCCTCATGGGAATGTAAACGGGAGCTTGCAGTCGACTCAAAACCCAACGCTGCCGACTGGACCCTATACAAAATCGTTTGAAAACGGTGTCCGTGCTGCGGAAACAAAGACCAAATTGGGGAAACATTGCTGTGAAGAATGTGAGAAGAGGTTTGCcactaaacaaaaactattcaGACACATGTGGGTACACAGAAGAAAGCAGTACGTATGCGAGGTGTGCGGGTGCGCGGTGAAGAGCCAGCAAGGCCTGGACGAGCACCGCCACGCCATGCACCCGGGCGAGAATCGACACATATGTTTCCAGTGTGGCAAGAGCTTTGTGAGCCGTCAGGGCCTCTGGGAGCACGGCAGGGTCCACGGTCGTGGACCCCCGGGGGTGTTCCATTGTCAGCAGTGCTCCAAGCAGTTCACGAGCCGACAAGGGTTTCTCATTCATAACCGAACACATACGGGTGAACGCCCTTACGGTTGCAAGTTTTGCACCAAGGCCTTCCGGGATGGCGGTACACTCCGAAAGCACGAGCGGATACACACCGGAGAGCGGCCCCATGCTTGCCCACTCTGTCACCGCGCGTTCAACCAGAAGGTGGTGCTGCGGGAGCACGTGAGATGGGTGCACGCGGCCAACAAGTCCAATAACGGTGTACCCCACATCTTCTCGTGCCGGCTGTGTGGCCAAACCCTCGCGGACAGGGAGGAACTGTGCGCTCATATCGTCCAACACAGTGACCAGATGGCGGCTGCCGCCAAAGCTTTGACCACAAGTAGCGTTGAAAAtccaaatattatcaaaaaagaACTCTGTGAAAAAATGGTAGCTTTAGAGACCACACCGCCTTCATCAACGGAAATGTGCGCCGATATGGGAGTGCAGGCATCGTCGGCAACTGATTCCTACATTACATCAAAGTATTTTGTTCCTAACGGGCCGATCACGATTAATAAACCAGAAGGTGGAGTAATTGTATCGCGTATAAAGATGGAGGCCAGGGATTATGTTTGTGACATGTGTGGGGAAGGTTTTGCGTTGAAGGAAGGTCTTTTGAATCATGTTTTAGTTCACATCTGA
Protein Sequence: MDAEVTVCEEEQINPIVGPSFSGHCSNSVQNDALLNFESSAMVVYQADVELSEDISTPQVKCLEFYHDSGELNQVDLPSLSSSATYLGNVSAEFGTTSHVNSIGMYVETEQKDTHSNSHDNNNFPKAYQDNILKVDINVTSKPEGSITYQNNNVKESVLEECDQEQTFYHHRSNVTDNVTVKSENIEPSTTTDDESMAVEALQQLGGGDLLYSNLNSLLHCYICGSKFHSRDSFQKHLSLCAETGMAAHTCSVCRETFTRKSDLENHLVCHQVDRPYACKICSTLFCRKAELQNHMTCHNVNRPLKCPQCGTDFQRLSSLTNHMKIHNHPPGKAVGLFELRSDGKPVSNPSAQEGKLKYEESSASVKPLQGIQPLTTLSLVTTPCFRLFNQPNLNQTGRDWDTNFQIISNTSEVLTTENKTSSLFLGTSVSHVNTTDTSLVSRPTEETSFSPASKVAVLPINSFNFSMNQSVDENSLHNICNSTNHTSGQLVNCSKIERLNTQIDKPQGGDNLVSKSDSNFCSVKVESMPYIMSQGCHPEEMFSTQSPEQDLPKAEDKRPHICRHCGTAFARIKALQSHVRLHEDNWGAPLYCKKCEENFPDEISLNRHQLRCTGPMTLPHGNVNGSLQSTQNPTLPTGPYTKSFENGVRAAETKTKLGKHCCEECEKRFATKQKLFRHMWVHRRKQYVCEVCGCAVKSQQGLDEHRHAMHPGENRHICFQCGKSFVSRQGLWEHGRVHGRGPPGVFHCQQCSKQFTSRQGFLIHNRTHTGERPYGCKFCTKAFRDGGTLRKHERIHTGERPHACPLCHRAFNQKVVLREHVRWVHAANKSNNGVPHIFSCRLCGQTLADREELCAHIVQHSDQMAAAAKALTTSSVENPNIIKKELCEKMVALETTPPSSTEMCADMGVQASSATDSYITSKYFVPNGPITINKPEGGVIVSRIKMEARDYVCDMCGEGFALKEGLLNHVLVHI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447822;
90% Identity: -
80% Identity: -