Tshe031827.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010003196.1:9526-16182[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9e-05 0.0052 19.5 1.2 1 23 124 146 124 146 0.97 2 14 0.00019 0.052 16.4 1.5 3 23 154 174 153 174 0.99 3 14 0.0001 0.027 17.3 0.1 1 23 292 314 292 314 0.98 4 14 0.024 6.4 9.8 0.2 1 23 320 343 320 343 0.95 5 14 4.4e-05 0.012 18.4 2.1 3 23 367 387 365 387 0.98 6 14 0.017 4.5 10.3 0.0 2 19 398 415 397 417 0.93 7 14 0.017 4.6 10.3 3.4 1 23 425 448 425 448 0.97 8 14 0.00054 0.15 15.0 3.1 1 19 455 473 455 477 0.96 9 14 0.0012 0.34 13.8 6.2 1 23 483 505 483 505 0.97 10 14 0.0032 0.87 12.5 0.2 2 23 511 532 510 532 0.96 11 14 0.00011 0.03 17.2 0.4 1 23 541 563 541 563 0.98 12 14 0.0048 1.3 12.0 0.2 3 23 571 591 569 591 0.97 13 14 0.00027 0.073 15.9 1.7 1 23 639 661 639 661 0.97 14 14 0.0068 1.8 11.5 0.2 1 20 926 945 926 948 0.93
Sequence Information
- Coding Sequence
- ATGGCCGATTCGGATGTCTATAGCGAGGCATTGCATCTCAAGTGGGAACCCGAGGAAGATCACGAAGAGACAATCTGCGGGGTCGATGACAACTGTATAATCTTTCCGAACCACCATGTTGTGCCCATGGGGGATCCGGTGGCCCTTGCCCCAGGAGCCGAGGGGTCCTCCCAGTACCAGTATCAGGCCCAGGACCTCCTGGGTATCCAAATGTCAGAGGAGGTTGTGTACGAGACGTGGGACAACGGTGAGGTGGTTGCAGACGTTGTCGGAGAAGAAGTTGTCGGGGAACAGGAGCTTCTATACAAAGAGGAGGATCCAGAGATTCCTCTCCCACAGAACCAGGACTCTTACACATTGATGCGGCCCTATCCCTGCGACTTCTGCAGCCGCCGTTTCCGCAAGAAGGCCAACCTAATGAACCACATGGTGTCGCACCAGACGGACCGGCCGCACGGCTGCAACCTCTGCGGCGCCCGGTATCGACGCAAGTGCGACCTCATCAACCACATGAAGATCCACGCGTACGCGCCCGGGCTGGCGGGCGCCAGCGACGATGACGATGACATTCCGTCAAATCATTCCCGGGAGAATGCCCACCCCACCATCAAAGGACGGCGCAAGAAGGCGCAGTCCAGCGCACCAAAGAAGAGGCGGAGTATCTCCTCAAACACCCAAAGCAGCAGGGAGATAGAATTCGACGAGCTATCCTTCTATAAAGATGGGAAACCTTACAGCTCTActcgtaaaaaaaacacaaacatttatcTTGATGATGGGGTACACTTACCGCCCTCGTCTGTCGGAGGAGATAGCGAGAAGCACGCGGAACCTCCTGTCCCGAAATGGCCGGTTACTGACGAGACCCGGCCTTACGTGTGCCAACACTGCGGAGTTGGCTTCGCCCGGGAGAAAGCCCTCGCGTCTCACGCCCGTATCCATGCCGGGGACAGCCCGTTTGAGTGTAACACATGTGGAGAGATGTTCTGGGACGTAACCCTTCTTAGAGACCATGCCAGGAACAAGCACAGAAACGCTGTTGCCAAATATAACAATGACGGTTCTTATGTGCCGGACAATAGCTACAGAGACTTTGGCTGTGAGATTTGTGAGCTTAGCTTTGATACACAGGAACATCTTAAGCGCCATCGCAAGTCCCACATAAAAGTGGAGCCGCCCTCCAACGAACTCATGTGCCAACTCTGCGGGGAGATGTTCCCCGACCAGGCCGAGTTGGCCCTTCATGCGGACTGCCACGCTCGGTATCAGCCCCACCGGTGCATGCTCTGTGGCCACTGCTTCGAGGACGCCGCCTCCGTGGCCACTCACGTGCGGCGCCGCCACGGGAAGAACGTCCCTGACTTCACATGCTCCTTGTGCGGTAAGACGTGCAAGGACAGGCGCTCACTTCAAAAGCACTCGTGGGTGCACTCGGCCGAGAGGAGCTTTCCGTGCCACAAGTGCAGCAAGCGTTTCCACAGCAGAGCGCGTCTTAAGAGACACATGGTGTCCCACCGAGACAAGGCGGTGTCCTGCAACGAGTGCGGGGAGGAGTTCCCCGATGGCCGAGCGTTGATAAACCACCGCCACAGTCACAACAAGGACCTAACCGCCCGCCAGTTCTCCTGCATGGAGTGCGGCAAGACGTTTGGTTCCCGCAGCTCCCAGCAGATACACGCCCGCATACACACGGGGGAGCGCCCGTACGGCTGCCGCTTCTGCTGGAAGGCTTTTGCGGATGGCGGGACGCTCAGGAAGCACGAGCGCATTCATACGGGAGAGAAGCCCTATGCGTGCGTGGTGTGCCCTCGATGCTTTCAACCAGCTAATGTATTTCTTTCTCAGGTTGTTCTTCGCGAACATATTCGCTCTCACCATTCTGGCCCGGATAAAACGACCAATCATGTCAACGTATATTCTTGCAAAGTTTGTGCCGCATCGTTCAGTAGGTCTGACGAGTTGTGTGCGCATCTTATACACCACAGTGACGAGAACACCGCAAGACACCGTATGCCAAGTCTCGGACCCCGCAAGTACAAGCGTCGGCGCCGGCTTATGGCACACGAACTGAACCGTTTCTCAAACTTTGCCGAGAAATACGCCACGAGTGACAGAAGAGACTCGGACTCCGAGTCGGACGAAGATTTGAAGCGGAAAATCACCAAGAAAAAGTACAAAACCAAGTCGAAACCTAGCGCTAGTGATAGTTTGAAGACGGTGGCCAAAGCCCTAAACTCTGTCGCGGAGAAATTTAACCTCATTGTTCATTCAAAGTCCGAATCCGGGAAAGCCAAACAAGAGAGAAAGTCACAAAAGGCTAAGCGCAAGTTGGCCCCCAACAGGAAATTTGCGGGTGTTTCCGGGAACTCCAAATCTAAAGAGGTCGCCAAGAGGCcgattgttaattttaattccgGTGGTTTCGTAAAGAGAACTAGACCTCCCACCGAGGGACGAGTCAGGCCAAGGACAAAGAATGTTACTTCGAGCACCCTGGCCGCCCTAAAGGCTGTGAGCACGATCTCCAAGGTGAATCACGAGTCCGATATGAACCGAGTACGGCCGAGGACAAAGAACGTGAACTATCATAGCACTCAGATGTCAAAACTCTCCCCCGCAGTGTTCCCAGACGGAAGCCCGGAGATGTCGAAACCGGGGGACAGTGAGCCAGGTCCCGAGCATGCGGCCAAAAGGAACATTGAAAACGGTGTCGAGCATTTGGAGGATTTTGCCGCGTTTGCtagttttaccataaaaacggAATCCGCCAACAATTTCAGATGTGAAATGtgtagtaaaacatttttgaatagATCTGAATTATTGGTACATGTCCCTGTTCACATTTGA
- Protein Sequence
- MADSDVYSEALHLKWEPEEDHEETICGVDDNCIIFPNHHVVPMGDPVALAPGAEGSSQYQYQAQDLLGIQMSEEVVYETWDNGEVVADVVGEEVVGEQELLYKEEDPEIPLPQNQDSYTLMRPYPCDFCSRRFRKKANLMNHMVSHQTDRPHGCNLCGARYRRKCDLINHMKIHAYAPGLAGASDDDDDIPSNHSRENAHPTIKGRRKKAQSSAPKKRRSISSNTQSSREIEFDELSFYKDGKPYSSTRKKNTNIYLDDGVHLPPSSVGGDSEKHAEPPVPKWPVTDETRPYVCQHCGVGFAREKALASHARIHAGDSPFECNTCGEMFWDVTLLRDHARNKHRNAVAKYNNDGSYVPDNSYRDFGCEICELSFDTQEHLKRHRKSHIKVEPPSNELMCQLCGEMFPDQAELALHADCHARYQPHRCMLCGHCFEDAASVATHVRRRHGKNVPDFTCSLCGKTCKDRRSLQKHSWVHSAERSFPCHKCSKRFHSRARLKRHMVSHRDKAVSCNECGEEFPDGRALINHRHSHNKDLTARQFSCMECGKTFGSRSSQQIHARIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACVVCPRCFQPANVFLSQVVLREHIRSHHSGPDKTTNHVNVYSCKVCAASFSRSDELCAHLIHHSDENTARHRMPSLGPRKYKRRRRLMAHELNRFSNFAEKYATSDRRDSDSESDEDLKRKITKKKYKTKSKPSASDSLKTVAKALNSVAEKFNLIVHSKSESGKAKQERKSQKAKRKLAPNRKFAGVSGNSKSKEVAKRPIVNFNSGGFVKRTRPPTEGRVRPRTKNVTSSTLAALKAVSTISKVNHESDMNRVRPRTKNVNYHSTQMSKLSPAVFPDGSPEMSKPGDSEPGPEHAAKRNIENGVEHLEDFAAFASFTIKTESANNFRCEMCSKTFLNRSELLVHVPVHI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01449832; iTF_01448817; iTF_01446840; iTF_01445020; iTF_01447797;
- 90% Identity
- iTF_01447797;
- 80% Identity
- -