Tpod022079.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- -
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000006.1:12571301-12589939[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.8e-05 0.0036 19.5 1.2 1 23 183 205 183 205 0.97 2 15 0.00018 0.035 16.3 1.5 3 23 213 233 212 233 0.99 3 15 9.7e-05 0.019 17.2 0.1 1 23 351 373 351 373 0.98 4 15 0.023 4.4 9.7 0.2 1 23 379 402 379 402 0.95 5 15 5.7e-06 0.0011 21.1 3.2 1 23 424 446 424 446 0.98 6 15 0.0052 1 11.7 0.0 2 20 457 475 456 476 0.93 7 15 0.016 3.1 10.2 3.4 1 23 484 507 484 507 0.97 8 15 0.0033 0.64 12.4 3.0 2 19 515 532 515 536 0.95 9 15 0.0012 0.23 13.8 6.2 1 23 542 564 542 564 0.97 10 15 0.0031 0.59 12.5 0.2 2 23 570 591 569 591 0.96 11 15 9e-05 0.017 17.3 0.3 1 23 600 622 600 622 0.98 12 15 0.0047 0.9 11.9 0.2 3 23 630 650 628 650 0.97 13 15 0.00019 0.036 16.3 0.3 1 23 656 678 656 679 0.95 14 15 0.00026 0.05 15.9 1.7 1 23 692 714 692 714 0.97 15 15 0.00031 0.061 15.6 0.2 1 20 980 999 980 1002 0.94
Sequence Information
- Coding Sequence
- ATGAAAGTCAGGAAACGGGTAAAGAGAGTGAAGAAGAACAAGAGTGCAGCGTCCACGGCGAAAAAGTGGAAGTTCATCTTCTTCTTGGTGTGTTTGCCTGTCGTGGGGGCGGCGTCATTTAATGCCTACTGGTTTACCACCACAACTAAGCTTGAAAGACCCAAGTTTATCAAATACGAGCATTTGAGAATCAGAAACAAGCGAGGCACTGCATCTCAAGTGGGAACCCGAGGAAGACCACGAAGAGACAATCTGCGGGGTCGACGACAACTGTATAATCTTTCCGAACAACCATGTTGTGCCCATGGGGGATCCGGTGGCCCTTGCCCCAGGAGCCGAGGGGTCCCCCAGTACCAGTACCAGTCTCAGGACCTCCTGGGTATCCAAATGTCGGAGGAGGTTGTGTACGAGACGTGGGACAACGGCGAGGTGGTCGCAGACGTTGTCGGaGAAGAAGTTGTCGGGGAACAGGAGCTTCTTTACAAAGAGGAGGATCCAGAGATTCCTCTCCCTCAGAACCAGGACTCTTACACATTGATGCGGCCCTACCCCTGCGACTTCTGCAGCCGCCGTTTCCGCAAGAAGGCCAACCTGATGAACCACATGGTGTCGCACCAGACGGACCGGCCGCACGGCTGCAACCTCTGCGGCGCCCGGTACCGACGCAAGTGCGACCTCATCAACCACATGAAGATCCACGCGTACGCGCCCGGGCTGGCGGGTGCCAGCGACGACGACGATGACATTCCGTCAAACCATTCCCGGGAGAATGCCCACCCCACCATCAAAGGGCGGCGCAAGAAGGCGCAGTCCAGCGCACCAAAGAAGAGGCGGAGTATCTCCTCAAACACCCAAAGCAGCAGGGAGATAGAATTTGACGAGCTGTCCTTCTATAAAGATGGGAAACCTTACAGCTCTTCtcgtaaaaaaaacacaaacatttatcTTGACGACGGGGTACACTTACCGCCCTCGTCTGTCGGAGGAGATAGCGAGAAGCACGCGGAACCTCCTGTCCCGAAATGGCCGGTCACTGACGAGACCCGCCCTTATGTGTGCCAACACTGCGGGGTTGGCTTCGCCCGGGAGAAAGCCCTCGCGTCTCACGCTCGTATCCATGCCGGGGACAGCCCGTTTGAGTGTAACACCTGTGGGGAGATGTTCTGGGATGTAACCCTGCTTAGAGACCATGCCAGGAACAAGCACGGTAACGCTGTTGCCAAATATAACAATGACGGTTCTTATGTGCCAGACAATAGCTACAGAGACTTTCGCTGTGAGATTTGTGAGCTTAGCTTTGATACACAGGAACATCTTAAGCGCCATCGCAAGTCCCACATAAAAGTGGAGCCGCCCGCTAACGAACTCATGTGCCAGCTTTGCGGAGAGACGTTCCCTGACCAGGCCGAGTTGGCCCTTCACACAGACTGCCACGCCCGCTACCAACCCCATCGGTGCATGCTCTGCGGCCACTGCTTCGAGGACGCCGCTTCCGTGGCCACTCATGTGCGGCGCCGCCACGGGAAGAACGTCCCTGACAACACTTGCTCCTTGTGCGGTAAGACGTGCAAGGACAGGCGCTCGCTTCAAAAGCACTCGTGGGTGCACTCGGCGGAGAGGAGCTTTCCATGCCACAAGTGCAGCAAGCGTTTCCACAGCAGAGCGCGTCTTAAGAGACACATGGTGTCCCACCGAGACAAGGCGGTGTCCTGCAACGAGTGCGGGGAGGAGTTCCCCGACGGCCGAGCGTTGATAAACCACCGCCACAGTCACAACAAGGACCTGACCGCCCGCCAGTTCTCCTGCGTGGAGTGCGGCAAGACGTTTGGTTCCCGCAGCTCCCAGCAGATACACGCCCGTATACACACGGGGGAGCGCCCGTACGGCTGCCGCTTCTGCTGGAAGGCTTTTGCGGACGGCGGGACGCTCAGGAAGCACGAGCGCATCCATACGGGAGAGAAGCCGTACGCGTGCGTGGTGTGCCCTCGTGCGTTCAACCAGCGCGTTGTTCTTCGCGAACATATTCGCTCTCACCATTCTGGCCCAGATAAAACGACCAATCATGTCAACGTATATTCTTGCAAAGTGTGTGCCGCGTCGTTCAGTAGGTCTGACGAGTTGTGTGCGCATCTTATACACCACAGTGATGAAAACACCGCAAGACACCGTATGCCAAGTCTCGGGCCCCGCAAGTACAAGCGTCGGCGCAGGCTTATGGCACACGAACTGAACCGTTTCTCAAACTTTGCCGAGAAATACGCCACGAGTGACAGAAGAGACTCAGACTCCGAGTCGGACGAGGATTTGAAGCGGAAAATCACCAAGAAAAAGTACAAAACCAAGTCGAAACCTAGCGCGAGTGATAGTTTGAAGACGGTGGCCAAAGCCCTAAACTCTGTCGCGGAGAAATTTAACCTCATTGTTCATTCAAAGTCCGAATCCGGGAAAGCCAAACAAGAGAGAAAGTCGCAAAAGGCTAAGCGCAAGTTGGCCCCCAACAGGAAATTTGCGGGTGTTTCCGGGAACTCCAAATCTAAAGAGGTCGCCAAGAGACcgattgttaattttaattccgGTGGTTTCGTAAAGAGAACTAGACCTCCCACCGAGGGACGAGTCAGGCCGAGGACAAAGAATGTTACTTCGAGCACCCTGGCCGCCCTAAAGGCTGTGAGCACGATCTCCAAGGTAAATCAAGAGCCTGATATGAGCCGAGTACGGCCGAGGACAAAGAATGTGAACTACCATAGCACGCAGATGTCAAAACTCTCCCCTGCAGTGTTCCCAGACGGAAGCCCGGATGAGATGTCGAAACCGGAGGACAGTGAGCCAGGTCTCGATCACGCGGCCAAAAGTAACATTGAAAACGGTGTCGAGCATTTGGAGGATTTTGCCGCGTTTGctagttttaccataaaaacggAACCCACCAACAATTTCAGATGTGAAATGtgtagtaaaacatttatgaatagATCTGAATTATTGGTACATGTCCCGATTCACATTTGA
- Protein Sequence
- MKVRKRVKRVKKNKSAASTAKKWKFIFFLVCLPVVGAASFNAYWFTTTTKLERPKFIKYEHLRIRNKRGTASQVGTRGRPRRDNLRGRRQLYNLSEQPCCAHGGSGGPCPRSRGVPQYQYQSQDLLGIQMSEEVVYETWDNGEVVADVVGEEVVGEQELLYKEEDPEIPLPQNQDSYTLMRPYPCDFCSRRFRKKANLMNHMVSHQTDRPHGCNLCGARYRRKCDLINHMKIHAYAPGLAGASDDDDDIPSNHSRENAHPTIKGRRKKAQSSAPKKRRSISSNTQSSREIEFDELSFYKDGKPYSSSRKKNTNIYLDDGVHLPPSSVGGDSEKHAEPPVPKWPVTDETRPYVCQHCGVGFAREKALASHARIHAGDSPFECNTCGEMFWDVTLLRDHARNKHGNAVAKYNNDGSYVPDNSYRDFRCEICELSFDTQEHLKRHRKSHIKVEPPANELMCQLCGETFPDQAELALHTDCHARYQPHRCMLCGHCFEDAASVATHVRRRHGKNVPDNTCSLCGKTCKDRRSLQKHSWVHSAERSFPCHKCSKRFHSRARLKRHMVSHRDKAVSCNECGEEFPDGRALINHRHSHNKDLTARQFSCVECGKTFGSRSSQQIHARIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACVVCPRAFNQRVVLREHIRSHHSGPDKTTNHVNVYSCKVCAASFSRSDELCAHLIHHSDENTARHRMPSLGPRKYKRRRRLMAHELNRFSNFAEKYATSDRRDSDSESDEDLKRKITKKKYKTKSKPSASDSLKTVAKALNSVAEKFNLIVHSKSESGKAKQERKSQKAKRKLAPNRKFAGVSGNSKSKEVAKRPIVNFNSGGFVKRTRPPTEGRVRPRTKNVTSSTLAALKAVSTISKVNQEPDMSRVRPRTKNVNYHSTQMSKLSPAVFPDGSPDEMSKPEDSEPGLDHAAKSNIENGVEHLEDFAAFASFTIKTEPTNNFRCEMCSKTFMNRSELLVHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450852;
- 90% Identity
- iTF_01447797;
- 80% Identity
- -