Tshe003753.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000162.1:256103-271289[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2e-05 0.0055 19.5 1.0 2 23 206 227 205 227 0.97 2 18 1.2 3.1e+02 4.5 1.7 3 23 236 256 234 256 0.95 3 18 5.2e-06 0.0014 21.3 0.2 1 23 262 284 262 284 0.98 4 18 0.053 15 8.7 0.9 1 23 290 313 290 313 0.93 5 18 0.0057 1.5 11.8 3.8 2 23 320 341 319 341 0.96 6 18 1.3e-06 0.00036 23.2 0.4 1 23 347 369 347 369 0.98 7 18 0.58 1.6e+02 5.4 1.7 1 23 375 397 375 397 0.97 8 18 0.00022 0.06 16.2 2.0 1 23 403 425 403 425 0.96 9 18 0.074 20 8.3 2.9 3 23 518 539 516 539 0.96 10 18 0.00012 0.032 17.1 1.6 1 23 544 566 544 566 0.99 11 18 0.28 76 6.4 1.2 1 23 573 595 573 595 0.98 12 18 0.0022 0.6 13.1 3.1 1 23 601 623 601 623 0.97 13 18 0.00025 0.067 16.1 1.6 1 23 629 652 629 652 0.97 14 18 7e-06 0.0019 20.9 0.6 1 23 659 681 659 681 0.98 15 18 5e-05 0.013 18.2 0.1 1 23 687 709 687 709 0.97 16 18 5.4e-05 0.015 18.1 0.6 1 23 715 737 715 737 0.99 17 18 1.9e-07 5.1e-05 25.9 1.4 1 23 743 765 743 765 0.96 18 18 0.00077 0.21 14.5 3.4 1 23 771 793 771 793 0.98
Sequence Information
- Coding Sequence
- ATGGATCGCATCGCTCTTCAGATGAACATAAAACGATTCAGCTGCAAGTTTGGTTCGTTATCGTTCGGCACGAAGCAGCTGCTGGATCTTCACATTCACACCCAGCTGACAAACCCGTGGTCCCCATCAACAGGACGAGTTGATTTCCCTTCTCGAGAAATGATGTACGCTTCTGAAGCTTCTGCCGAatctattgtttgttttgtcgGGTTTAACCAAGAAGAGGTACCACCACACCCAGGTTACATTTCTCATCAAGCGAAAGAAGTGAAGCAAAAGATCCAACCAAGCACAGGTTTTGAAACAATGTGCACCGGTACCATGGATATCGAAACAATCACAATTAAGAGTGAAATCTTCCCTTTCAATGAACCGACCGACATGGGCGTAAATGAAGAAGACAACTTGAACTCGTATAGCGCTGAAGTTTCAAAGTTTTCCAAATCATCTATTCATAATGTAAAAGTACTAACAAACCCGATAATTAAAGTTTCACAGACTGGGTCGTCTATATATGCCACCACTACTTTACCAAACTCATTCCCCGCTCGTAAAATCAAGCCAAAGCTCCCCAATTCAGAGGTTTCTAACAacatatttacaacaaaacGAGTCTCATGCGATGTTTGCTTCAAGAGTTTCCGATACGCCAGTAGACTAAAACTGCACATGCAGACTCATAGCAAAGAGAGACCCAAGTTGTTTTGTGATCTGTGCAGTTTCTCAACTTTACGGGAAGATTCCTTGAGCAAACATCGCAAGAGACACATGAACGAGAATCTTTATGTTTGCGATATTTGTAAAAGAAGTTTCCGCGAAAGAAGTGATTTAGTGGAACACTTGAATGTTCACGCAGGGAAGGAACCTTTTCAATGTGACATTTGTGGTCTATCATTTTTACTCGGGAGCAAACTGTCCTATCACAGAAAAACCTTCCACAGTAATTCAGGAAAAATCTCATGTGCTCATTGCGATAAAGAGTTTGTTCACCATTTTGAGTGGAAGATGCATATGCAGGGGCATAAGAAAGAAAAACTTTACACTTGCGACTACTGCGGTAGAACTTTTACGAcgaaaaatgttttgaagattCATATAGCGGTTCATATGAACATAAAAAGCTTCACTTGCAAGTTTTGTTCTTTATCGCTCAATACGGGACAACTGCTGAAGCTTCACACATACTCACACATGGCTAAGAAACCGTATATGTGTAAAAAATGTGACCAGACATTCATCCAGCACTCGGCGTATGAAGCCCATGTTAATTTTCACACTGGGAAGCGCCCGTCATCAAAAAGAAGACGCTTTATTTTACCTAAAAGAGAGAAtggtaacatttcaaatgtttcaCCTCATTTGACAAAGAATACCAAAGCATTAAGTTTTCAAAGAAATTCCTCTTTAAGTGTGACTTCCAATGATAAACCTAAGGATGAGAATATCGCCGAAGCTCCAATAGTCAATATTCTAGACTGCCTTAAGGTTTCCTTCGATGAGATATCAACTCCTCCCCGGAAGAAACCTTCGCGTCCTTTGAAATCGCTCGCATGCGAATTTTGCGACAAGGTATGCCTCAACAGGAAAAGACTGAACCATCACATAAGAATCGTTCATTCAAACTTTCGATACACTTGCGATATATGCTCCAAAGAGTACAAAAACAAAGGGACACTAGACATGCACAAAAAAACTCACAGCGACGGCTCGGAAAACTACGTTTGTGATATGTGTAAGTTCACCACTCCGTGGAAAACCAGCATGACCATCCACCGCAGGAGACATCTAGGGAAAACAAGCTTTCAGTGCGATCTTTGTGATAAGGCATATTACAAGAAATGTGAGCTAGAGCAGCATAAATATGTCCATAACACATCTAAACCATACCAGTGTGATGTGTGTGGTGCGTCCTACATGCAAAAACACACCCTGTGGCAACACACCCAATCGAAACACTCTGCCGACGCTCCACAGTTCCCGTGCCCGGATTGCGGCCGACTGTACATCTTCAAATCTAAGTTAAAGTCGCACATCAAGACTCATCTAGGGTTCAGACCGTACGTCTGCGACATTTGCGGGAAATCCGTCGCGACCAGGAAGTCCCTCAGCAATCACAAGGCGATACATATGAACGAGAAGACGTTCAAGTGTGACCTCTGCCCCAAGGCGTTCAACACAACCCCGGGGCTGAAACTCCACAAGCGCTCCCACACGGGCGAGAAACCGTACCTGTGCAAGGAGTGCGGTAAGAGGTTCACGCAGCGTTCGACGCTCGTGGTCCACATGCGGTATCATTTGGGGGAGCGCCCGTATATGTGCCATATATGTACCAAAGGGTTTGTGACGAAAACAATCCTCAAGACCCATCTTAAGAAACATGGTTGA
- Protein Sequence
- MDRIALQMNIKRFSCKFGSLSFGTKQLLDLHIHTQLTNPWSPSTGRVDFPSREMMYASEASAESIVCFVGFNQEEVPPHPGYISHQAKEVKQKIQPSTGFETMCTGTMDIETITIKSEIFPFNEPTDMGVNEEDNLNSYSAEVSKFSKSSIHNVKVLTNPIIKVSQTGSSIYATTTLPNSFPARKIKPKLPNSEVSNNIFTTKRVSCDVCFKSFRYASRLKLHMQTHSKERPKLFCDLCSFSTLREDSLSKHRKRHMNENLYVCDICKRSFRERSDLVEHLNVHAGKEPFQCDICGLSFLLGSKLSYHRKTFHSNSGKISCAHCDKEFVHHFEWKMHMQGHKKEKLYTCDYCGRTFTTKNVLKIHIAVHMNIKSFTCKFCSLSLNTGQLLKLHTYSHMAKKPYMCKKCDQTFIQHSAYEAHVNFHTGKRPSSKRRRFILPKRENGNISNVSPHLTKNTKALSFQRNSSLSVTSNDKPKDENIAEAPIVNILDCLKVSFDEISTPPRKKPSRPLKSLACEFCDKVCLNRKRLNHHIRIVHSNFRYTCDICSKEYKNKGTLDMHKKTHSDGSENYVCDMCKFTTPWKTSMTIHRRRHLGKTSFQCDLCDKAYYKKCELEQHKYVHNTSKPYQCDVCGASYMQKHTLWQHTQSKHSADAPQFPCPDCGRLYIFKSKLKSHIKTHLGFRPYVCDICGKSVATRKSLSNHKAIHMNEKTFKCDLCPKAFNTTPGLKLHKRSHTGEKPYLCKECGKRFTQRSTLVVHMRYHLGERPYMCHICTKGFVTKTILKTHLKKHG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446824;
- 90% Identity
- -
- 80% Identity
- -