Tdou001934.1
Basic Information
- Insect
- Timema douglasi
- Gene Symbol
- -
- Assembly
- GCA_901482245.1
- Location
- CABEEJ010000073.1:345660-362967[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.6e-05 0.0061 19.2 1.0 2 23 244 265 243 265 0.97 2 19 0.95 2.2e+02 4.8 2.5 3 23 274 294 272 294 0.95 3 19 5.1e-06 0.0012 21.4 0.3 1 23 300 322 300 322 0.98 4 19 0.072 17 8.4 1.2 1 23 328 351 328 351 0.93 5 19 0.0071 1.7 11.5 3.8 2 23 358 379 357 379 0.96 6 19 1.6e-06 0.00039 23.0 0.4 1 23 385 407 385 407 0.98 7 19 0.077 18 8.3 2.0 1 23 413 435 413 435 0.95 8 19 0.00011 0.027 17.2 1.7 1 23 441 463 441 463 0.96 9 19 8.1 1.9e+03 1.9 0.9 1 8 469 476 469 477 0.91 10 19 0.093 22 8.0 2.9 3 23 660 681 658 681 0.96 11 19 0.00015 0.035 16.8 1.6 1 23 686 708 686 708 0.99 12 19 0.35 84 6.2 1.2 1 23 715 737 715 737 0.98 13 19 0.0028 0.66 12.8 3.1 1 23 743 765 743 765 0.97 14 19 0.00031 0.074 15.8 1.6 1 23 771 794 771 794 0.97 15 19 8.8e-06 0.0021 20.7 0.6 1 23 801 823 801 823 0.98 16 19 6.3e-05 0.015 18.0 0.1 1 23 829 851 829 851 0.97 17 19 6.8e-05 0.016 17.9 0.6 1 23 857 879 857 879 0.99 18 19 2.4e-07 5.6e-05 25.6 1.4 1 23 885 907 885 907 0.96 19 19 0.00097 0.23 14.2 3.4 1 23 913 935 913 935 0.98
Sequence Information
- Coding Sequence
- ATGCTGCTAACCCAAACGGTTGGTGAATCATCGAGACATATCAGAGTTGAGACGGGGATAATCTATGAACATAAAACGATTCAGCTGGAAGTTTTGTTCGTTATCGTTCGGCACGAAGCAGCTGTTGGATCTTCACATTCACACCCAGCTGACAAAACCGTGGTGGCCCCTGTCGGACATCTCACCATTCTTCTCAAGTTGTGGATTTTACAGGAGGGGACTCATGAAAAGtgGTCCCCATCAACAGGACGAGTTGATTTCCCTTCCCGAGAAATGATGAACGCTTCTGAAGCTTCCGCCGAAgctattgtttgttttgttgggTTCGACCAAGAAGAGGTACCACCACACCCAGGCTACATTTCTCATCAAGGGAAAGAAGGGAAGCAAAAGATCCAACCAAGCACGAATTTTGAAACAATGTGCACCGGCACTATGGATATCGAAACAATCACAATTAAGAGTGAAACCTTCCCTTTCAATGAACCGACTGACATGGGCGTAAATGAAGAAGACAACTTGAACTCGTATAACACTGAAGTTCCAAAGTTTTCCAAAACATCTATTCATAATGTAAAAGTACTAACAAACCCGATAATTAAAGTTTCCCAGACCGGGTCATCTATACATACTACCACTACTTTACCAAACTCATCCCCTGCCCGTAAAATCAAGCCAAAGTGCCCCTATTCAGAGGTTTCTAACAACATATTTACAACAAAACGAGTCTCATGCGATGTTTGCTTCAAGAGTTTCCGATACGCCAGTAGACTAAAACTGCACATGCAGACTCATAGCAAAGAGAGACCCAAGTTGTTTTGTGATCTGTGCAGTTTTTCAACTTTACGGAGAGATTCCTTGAGCAAACATCGCAAGAGACACGTGAACGAGAATCTTTATGTTTGCGATATTTGTAAAAGAAGTTTCCGCGAAAGAAGTGATTTAGTGGAACACTTGAAAGTTCACGCAGGGAAGGAACCTTTTAAATGTGACATTTGTGGTCTATCATTTTTACTCGGGAGCAAACTGTCTTATCACAGAAAAACCTTCCACAGTAATTCAGGAAAAATCTCGTGTGCTCATTGCGATAAAGAGTTTGTTCACCATTTTGAGTGGAAGATGCATATGCAGGGGCATAAGAAAGAAAAACTTTACACTTGCGACTACTGCGGTAGAACTTTTACGAcgaaaaatgttttgaagattCATATAGCGGTTCATATGAACATTAAAAGCTTCTCTTGCAAGTTTTGTTCTTTATCGTTCAACACGGGACAACTGCTGAAGCTTCACACATACTTACACATGGCTAAGAAACCGTATATGTGTAAAAAATGTGGCCAGACATTCATCCAGCACTCGGCGTATGAAGCCCATGTTAATTTTCACACTGGGAAGCGCCCGTACACATGTCACATATGCAGTAAAGGGCCTCCATCAACAGGTCGAGTTGATTTCCCTTACCGTGGAATGATGAAGGCTTCTGAAGCttctattgtttgttttgttgggTTTGATCAAGATGAGGTACCACCACACCCAGGTTACATTTCTCATCAAGGGAAAGAAGTGAAGCAAAAGATCCAACCAAGCACAGATTTTGAAACAACGTGCACCGGTACTATAGATATCGAAACAATCACAATTAAGAGTGAAACCTCCCCTTTCAATGAACCGACTGACATGGACATAAATGAAGAAGACAACTTGAACTCGTCATCAAAAAGAAGACGCTTTATTTTACCTAAAAGAGAGAAtggtaacatttcaaatgtttcaCCTCATTTGACAAAGAATATCAAAGCATTAAGTTTTCAAAGAAACGCCTCTTTAAGTGTGACTTCCAATGATAAACCTAAGGACGAGAATATCGCCGAAGGTCCAATAGTCAATATTCTAGACTGCCTTAAGGTTTCCTTCGATGAGATATCAACTCCTCCTCGGAAGAAACCTTCGCGTCCTTTGAAATCGCTCGCGTGCGAATTTTGCGACAAGGTATGCCTCAACAGGAAAAGACTTAACCATCACATAAGAATCGTTCATTCAAACTTTCGATACACTTGCGATATATGCTCCAAAGAGTACAAAAACAAAGGAACATTAGACATGCACAAAAAAACTCACAGCGACGGCTCGGAAAACTACGTCTGTGATATGTGTAAGTTCACCACTCCGTGGAAAACCAGCATGACCATCCACCGCAGGAGACATCTAGGGAAAACAAGCTTTCAGTGCGATCTTTGTGATAAGGCATATTACAAGAAATGTGAGTTGGAGCAGCATAAGTATGTCCATAACACATCTAAACCATACCAGTGTGATGTGTGTGGTGCGTCCTACATGCAAAAACACACCCTGTGGCAACACACCCAATCAAAACACTCCGCCGACGCTCCACAGTTCCCGTGCCCGGATTGCGGCCGACTGTACATCTTCAAGTCTAAGTTGAAGTCGCACATCAAGACTCATCTAGGGTTCAGACCGTACGTCTGCGACATTTGCGGGAAATCCGTCGCGACCAGGAAGTCCCTCAGCAATCACAAGGCGATACATATGAACGAGAAGACGTTCAAGTGTGACCTCTGCCCCAAGGCGTTCAACACGACCCCGGGGCTGAAACTCCACAAGCGCTCCCACACGGGCGAGAAACCGTACCTGTGCAAGGAGTGCGGTAAGAGGTTCACGCAGCGTTCGACGCTCGTGGTCCACATGCGATATCATTTGGGGGAGCGCCCATATATGTGCCATATATGTACCAAAGGGTTTGTGACGAAAACAATCCTCAAGACCCATCTTAAGAAACACGGTTGA
- Protein Sequence
- MLLTQTVGESSRHIRVETGIIYEHKTIQLEVLFVIVRHEAAVGSSHSHPADKTVVAPVGHLTILLKLWILQEGTHEKWSPSTGRVDFPSREMMNASEASAEAIVCFVGFDQEEVPPHPGYISHQGKEGKQKIQPSTNFETMCTGTMDIETITIKSETFPFNEPTDMGVNEEDNLNSYNTEVPKFSKTSIHNVKVLTNPIIKVSQTGSSIHTTTTLPNSSPARKIKPKCPYSEVSNNIFTTKRVSCDVCFKSFRYASRLKLHMQTHSKERPKLFCDLCSFSTLRRDSLSKHRKRHVNENLYVCDICKRSFRERSDLVEHLKVHAGKEPFKCDICGLSFLLGSKLSYHRKTFHSNSGKISCAHCDKEFVHHFEWKMHMQGHKKEKLYTCDYCGRTFTTKNVLKIHIAVHMNIKSFSCKFCSLSFNTGQLLKLHTYLHMAKKPYMCKKCGQTFIQHSAYEAHVNFHTGKRPYTCHICSKGPPSTGRVDFPYRGMMKASEASIVCFVGFDQDEVPPHPGYISHQGKEVKQKIQPSTDFETTCTGTIDIETITIKSETSPFNEPTDMDINEEDNLNSSSKRRRFILPKRENGNISNVSPHLTKNIKALSFQRNASLSVTSNDKPKDENIAEGPIVNILDCLKVSFDEISTPPRKKPSRPLKSLACEFCDKVCLNRKRLNHHIRIVHSNFRYTCDICSKEYKNKGTLDMHKKTHSDGSENYVCDMCKFTTPWKTSMTIHRRRHLGKTSFQCDLCDKAYYKKCELEQHKYVHNTSKPYQCDVCGASYMQKHTLWQHTQSKHSADAPQFPCPDCGRLYIFKSKLKSHIKTHLGFRPYVCDICGKSVATRKSLSNHKAIHMNEKTFKCDLCPKAFNTTPGLKLHKRSHTGEKPYLCKECGKRFTQRSTLVVHMRYHLGERPYMCHICTKGFVTKTILKTHLKKHG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447758; iTF_01450804;
- 90% Identity
- -
- 80% Identity
- -