Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010000681.1:15998-21893[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0003 0.083 15.8 4.2 1 23 12 34 12 34 0.96

2 15 2.7e-05 0.0074 19.1 0.5 1 23 40 62 40 62 0.97

3 15 0.00014 0.038 16.8 0.8 1 23 68 90 68 90 0.92

4 15 2e-06 0.00055 22.6 0.3 1 23 96 118 96 118 0.95

5 15 0.00021 0.057 16.3 0.3 1 23 124 146 124 146 0.93

6 15 1.1e-07 3e-05 26.6 0.9 2 23 153 174 153 174 0.97

7 15 2.8e-05 0.0075 19.0 0.3 1 23 180 202 180 202 0.98

8 15 0.0038 1 12.3 7.5 1 23 261 283 261 283 0.97

9 15 1.6e-06 0.00043 22.9 1.4 1 23 288 310 288 310 0.95

10 15 0.00018 0.05 16.5 3.0 1 23 316 338 316 338 0.96

11 15 0.00098 0.27 14.2 3.4 1 23 344 366 344 366 0.97

12 15 0.0051 1.4 11.9 0.5 1 23 372 394 372 394 0.94

13 15 9.1e-07 0.00025 23.7 3.0 2 23 401 422 400 422 0.97

14 15 1.7e-08 4.6e-06 29.1 0.9 1 23 428 450 428 450 0.98

15 15 0.00026 0.072 16.0 7.4 1 23 456 478 456 478 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0003	0.083	15.8	4.2	1	23	12	34	12	34	0.96
2	15	2.7e-05	0.0074	19.1	0.5	1	23	40	62	40	62	0.97
3	15	0.00014	0.038	16.8	0.8	1	23	68	90	68	90	0.92
4	15	2e-06	0.00055	22.6	0.3	1	23	96	118	96	118	0.95
5	15	0.00021	0.057	16.3	0.3	1	23	124	146	124	146	0.93
6	15	1.1e-07	3e-05	26.6	0.9	2	23	153	174	153	174	0.97
7	15	2.8e-05	0.0075	19.0	0.3	1	23	180	202	180	202	0.98
8	15	0.0038	1	12.3	7.5	1	23	261	283	261	283	0.97
9	15	1.6e-06	0.00043	22.9	1.4	1	23	288	310	288	310	0.95
10	15	0.00018	0.05	16.5	3.0	1	23	316	338	316	338	0.96
11	15	0.00098	0.27	14.2	3.4	1	23	344	366	344	366	0.97
12	15	0.0051	1.4	11.9	0.5	1	23	372	394	372	394	0.94
13	15	9.1e-07	0.00025	23.7	3.0	2	23	401	422	400	422	0.97
14	15	1.7e-08	4.6e-06	29.1	0.9	1	23	428	450	428	450	0.98
15	15	0.00026	0.072	16.0	7.4	1	23	456	478	456	478	0.96

Sequence Information

Coding Sequence: ATGAGTGACCCGGTGCCTGTCCAAGACAAACGTCACACCTGCCACATCTGCCTAAAGAGCTACGCAAGTCGCCACAGCCTCACCGAACATATGGCCTGGCATAGTGGTATAAAGACCTTTTTCTGTCCCGTGTGTGAGAAAGGCTATTACAGTGCGACTCAGCTCAGAACCCATGCCAGGACTCACTCCTCCGTCAGACCCTATCTCTGTAACATATGTGGCAAGTCTTACAAGCTGGATTCAGACCTCAAGAGACACTCTTTCATCCACTCTGAACTATCGCCATACCTATGCAACATTTGCGGCAAGACCACCAATAGTAAGAGCGAACTGAATGTCCACATTCAATTGCATTCTAACGAGAAAAAGTATCTTTGTTCAGATTGTGGTCGAGCCTTTAAGCTGAGGAGCGTATTGAAGAAACACTCTGCGGTCCACAGCCCAGAAAAACCTGAGGTCTGTAAGGTCTGTGATATGTCATTCAAGAGAAAGGAGTATTTAGAAAGGCACATGCGTATCCACACAGGTGAAAACCCTTATATCTGCAAGTTCTGTGGCCGAGCGTTCTCGGGCAAGTGGAACATGATACAGCACGTCCGACTTCATACTGGTGTCAAACcgtatgtatTCTCGGAGTCCAACGAGAACTCCAAGTCCATAGCCTCCCTCTCATCTAGTATAAAGGACAAATCAGTTCCGAAGAGTGTTGTTGCAGAGAATTGTAAGGACCCTATAAACTGCAGTGAAATTGAACCCTTGTCCTCTCTTTCAAACCCACTATTCCATTGCTCAAAGTGTCCCAAGACATGTGTTACTCACCAGTCTCTCATGAGCCATATGAGTAGTCACATGACTAAAGTATTTGTTTGCACAGAGTGTGATAAGTGCTTCAGCAACGCTTACCAGCTGAAGATCCACGCAGTAAGCCATAGTGCGGAGCGTCCTTATTCGTGCGCACAGTGCGGTAAATGCTTCAAGACATATAACAAGCTAAGCCAACATGCTGGGACCCATTCTGACTATCCCCGCCACCGCTGCGAGGTTTGCGGGAAAAGTTTTAAAGCCAAAAGCATCCTGAACAGTCACAGGCACGTTCACTCTAGTGATAAAGACTATTTATGTACAGAGTGTGGAAAGGCATTCAAATGGAAACGCGTCTTTGTCACCCACCTCAAAGTCCACAGCACGGAGAAGCCACTAAAGTGTGCGACGTGCAACAAGGCGTTCAAGAGGAAGGAACATCTCAGCAGGCACATGAACATTCACACCAAAGAGAATCCTTTTGTGTGTGAGTTCTGCGGGCGCTCGTTCTCCCAGAGCTCGAATCTGACTTCACACATACGACTCCACACCGGTGCCAAACCATTCTCTTGTCATGTGTGCGGGAAGGCATTTAGGCACCGTTTGTCACTCAAGAAACATGGGAAACATCACAAAGCATCTGAAGTTGGGTCAGAACAGGCACCCTTGGCCCAACATAAATAA
Protein Sequence: MSDPVPVQDKRHTCHICLKSYASRHSLTEHMAWHSGIKTFFCPVCEKGYYSATQLRTHARTHSSVRPYLCNICGKSYKLDSDLKRHSFIHSELSPYLCNICGKTTNSKSELNVHIQLHSNEKKYLCSDCGRAFKLRSVLKKHSAVHSPEKPEVCKVCDMSFKRKEYLERHMRIHTGENPYICKFCGRAFSGKWNMIQHVRLHTGVKPYVFSESNENSKSIASLSSSIKDKSVPKSVVAENCKDPINCSEIEPLSSLSNPLFHCSKCPKTCVTHQSLMSHMSSHMTKVFVCTECDKCFSNAYQLKIHAVSHSAERPYSCAQCGKCFKTYNKLSQHAGTHSDYPRHRCEVCGKSFKAKSILNSHRHVHSSDKDYLCTECGKAFKWKRVFVTHLKVHSTEKPLKCATCNKAFKRKEHLSRHMNIHTKENPFVCEFCGRSFSQSSNLTSHIRLHTGAKPFSCHVCGKAFRHRLSLKKHGKHHKASEVGSEQAPLAQHK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445849;
90% Identity: iTF_01445849;
80% Identity: -