Basic Information

Insect: Timema cristinae
Gene Symbol: -
Assembly: GCA_002928295.1
Location: CM009476.1:16378011-16391258[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00035 0.052 15.4 4.2 1 23 123 145 123 145 0.96

2 15 6.8e-05 0.0099 17.7 0.9 1 23 151 173 151 173 0.97

3 15 0.00016 0.024 16.5 0.8 1 23 179 201 179 201 0.92

4 15 2.4e-06 0.00035 22.3 0.3 1 23 207 229 207 229 0.95

5 15 0.00025 0.036 16.0 0.3 1 23 235 257 235 257 0.93

6 15 1.3e-07 1.9e-05 26.3 0.9 2 23 264 285 264 285 0.97

7 15 3.2e-05 0.0047 18.7 0.3 1 23 291 313 291 313 0.98

8 15 0.0004 0.058 15.3 5.2 1 23 368 390 368 390 0.97

9 15 1.9e-06 0.00027 22.6 1.4 1 23 395 417 395 417 0.95

10 15 5.2e-05 0.0076 18.1 4.5 1 23 423 445 423 445 0.97

11 15 0.0012 0.17 13.8 3.4 1 23 451 473 451 473 0.97

12 15 0.0059 0.86 11.6 0.5 1 23 479 501 479 501 0.94

13 15 1.1e-06 0.00016 23.4 3.0 2 23 508 529 507 529 0.97

14 15 2e-08 2.9e-06 28.8 0.9 1 23 535 557 535 557 0.98

15 15 0.00031 0.045 15.6 7.4 1 23 563 585 563 585 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00035	0.052	15.4	4.2	1	23	123	145	123	145	0.96
2	15	6.8e-05	0.0099	17.7	0.9	1	23	151	173	151	173	0.97
3	15	0.00016	0.024	16.5	0.8	1	23	179	201	179	201	0.92
4	15	2.4e-06	0.00035	22.3	0.3	1	23	207	229	207	229	0.95
5	15	0.00025	0.036	16.0	0.3	1	23	235	257	235	257	0.93
6	15	1.3e-07	1.9e-05	26.3	0.9	2	23	264	285	264	285	0.97
7	15	3.2e-05	0.0047	18.7	0.3	1	23	291	313	291	313	0.98
8	15	0.0004	0.058	15.3	5.2	1	23	368	390	368	390	0.97
9	15	1.9e-06	0.00027	22.6	1.4	1	23	395	417	395	417	0.95
10	15	5.2e-05	0.0076	18.1	4.5	1	23	423	445	423	445	0.97
11	15	0.0012	0.17	13.8	3.4	1	23	451	473	451	473	0.97
12	15	0.0059	0.86	11.6	0.5	1	23	479	501	479	501	0.94
13	15	1.1e-06	0.00016	23.4	3.0	2	23	508	529	507	529	0.97
14	15	2e-08	2.9e-06	28.8	0.9	1	23	535	557	535	557	0.98
15	15	0.00031	0.045	15.6	7.4	1	23	563	585	563	585	0.96

Sequence Information

Coding Sequence: ATGTGCACAGTCAATATAAATGATGAAACGACGACAATAGACAGTGCTGAGCCAAACAAGAAagaagttgaaattaaattagaagAAACATCAACATTAGAAGAGCGTTTTGGTGGCATTATTCCTCTGGCTGACTCGGGAATCTCAAACTGTATCCTTGAGAAGTATATCCCAACTGCACATTCTCCAAGAAGAAAACAATCAGAGAAGGCGCCAAATGTGTTGTCAGGAGGTGGAACCACATACAACACGTCCGCCTACACACCGGGGCTATGCCTTATGTTTGTGCGGTGTGTGGTGAAGCCTTCAGACATAACTGGGCCATCCTCAAGCACGAGTGACCCAGTGCCTGTCCAAGACAAACGTCACACCTGCCACATCTGTCTAAAGAGCTACGCAAGTCGCCACAGCCTCACCGAACATATGGCCTGGCACAGTGGTATAAAGACCTTTTTCTGTCCTGTGTGTGAGAAGGGTTATTACAGTGCGACTCAGCTCAGAACTCATTCCAGGACTCACTCCTCCATCAGACCCTATCTCTGTAACATATGTGGCAAGTCTTACAAGCTGGATTCAGACCTCAAGAGACACTCTTTCATACACTCTGAACTATCGCCATACCTATGCAACATTTGCGGCAAGACCACCAATAGTAAGAGCGAACTGAATGTACACATTCAATTGCATTCTAATGAGAAAAAGTATCTTTGTTCAGACTGTGGTCGAGCCTTTAAGCTGAGGAGCGTGTTGAAGAAACACTCTGCGGTCCACAGCCCAGAAAAACCTGAGGTCTGTAAGGTCTGTGATATGTCATTCAAAAGAAAGGAATATTTAGAAAGGCACATGCGCATCCACACAGGTGAAAACCCTTATATCTGCAAGTTCTGTGGCCGAGCGTTCTCGGGCAAGTGGAACATGATACAGCACGTCCGACTTCATACTGGTGTCAAAccgtatTCCAACAAGAACTCCAAGTCCATAGCCTCTCTCTCATCTAGTATAAAGGACAAATCAGTTTCGAAGAGTGTTGTCGCAGAGAATTGTAAGGACCCTATAAACTGCAGTGAAATTGAACCCTTGTCCTCTCTTTCAAGCCCACTATTCCATTGCTCAAAGTGTCCCAAGACATATGTTACTCACCAGTCTCTCATGAGCCATATGAGTAGTCACATGACTAAAGTATTTGTTTGCACAGAGTGTGATAAGTGCTTCAGCAACGCTTACCAGCTGAAGATCCACGCAGTAAGCCATAGTGCAGAGCGTCCTTATTCTTGCACACAGTGCGGTAAATGTTTCAAGACATATAACAAGCTAAGGCAACATGCTGGGACCCATTCTGACTATCCCCGCCACCGCTGCGATGTTTGCGGGAAAAGTTTTAAAGCCAAAAGCATCCTGAACAGTCACAGGCATGTTCACTCTAGTGATAAAGACTATTTATGTACAGAGTGTGGAAAGGCATTCAAATGGAAACGCGTCTTTGTCACCCACCTCAAAGTCCACAGCACGGAGAAGCCACTCAAGTGTGCGACATGCAACAAGGCGTTCAAGAGGAAGGAACATCTCAGCAGGCACATGAACATTCACACCAAAGAGAATCCTTTTGTGTGTGAGTTCTGCGGGCGCTCGTTCTCCCAGAGCTCGAATCTGACTTCACACATACGACTCCACACCGGTGCCAAACCATTCTCTTGTCATGTGTGCGGGAAGGCATTTAGGCACCGTTTGTCACTCAAGAAACATGGGAAACATCACAAAGCATCTGAAGTTGGGGCAGAACAGGCACCCTTGGCCCAACATAAATAA
Protein Sequence: MCTVNINDETTTIDSAEPNKKEVEIKLEETSTLEERFGGIIPLADSGISNCILEKYIPTAHSPRRKQSEKAPNVLSGGGTTYNTSAYTPGLCLMFVRCVVKPSDITGPSSSTSDPVPVQDKRHTCHICLKSYASRHSLTEHMAWHSGIKTFFCPVCEKGYYSATQLRTHSRTHSSIRPYLCNICGKSYKLDSDLKRHSFIHSELSPYLCNICGKTTNSKSELNVHIQLHSNEKKYLCSDCGRAFKLRSVLKKHSAVHSPEKPEVCKVCDMSFKRKEYLERHMRIHTGENPYICKFCGRAFSGKWNMIQHVRLHTGVKPYSNKNSKSIASLSSSIKDKSVSKSVVAENCKDPINCSEIEPLSSLSSPLFHCSKCPKTYVTHQSLMSHMSSHMTKVFVCTECDKCFSNAYQLKIHAVSHSAERPYSCTQCGKCFKTYNKLRQHAGTHSDYPRHRCDVCGKSFKAKSILNSHRHVHSSDKDYLCTECGKAFKWKRVFVTHLKVHSTEKPLKCATCNKAFKRKEHLSRHMNIHTKENPFVCEFCGRSFSQSSNLTSHIRLHTGAKPFSCHVCGKAFRHRLSLKKHGKHHKASEVGAEQAPLAQHK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450797;
90% Identity: iTF_01450797;
80% Identity: -