Tshe021536.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010001686.1:58048-59827[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.1e-08 6e-05 25.1 0.0 1 36 18 53 18 58 0.87
Sequence Information
- Coding Sequence
- ATGCcaagaaaaccaaaaaaactgTTGGGCACACGAGCGTACAGGAATTACACTCCAAATACATTGCAAGAATGCCTTGTAAAGGTCAGGTCTGGACAACTTACTCAACGAGTTGCTGCAGAAAGATATAACATCTCAAGATCTACAATCAAGAGTAAACTGAAAGGTCTGCACGACAAACCAGTAGGTCGCTCTCGTGTGTTTTCACCTGAAGAAGAATTAGCCTTTGTGCagcatttgataaaattatctgACTACGGATTTCCAGTTGTTGAATCAGATTTTCGAATGATTGTAAAAAACTATCTTGATAAAAAAGGGGGTAAGGTTAGCGTGTTCTCAGGAAATTACCCTGGCTATGAATGGACAAAAGGGTTTTTGAAAAGACATCCTGATCTTTCAGTCAGAACCAGCGCTAATATTAAGAAAGTGCGTGCTAATGTTGGTGAAGCGGAACTCAACGATTACATGGACAACTTGAGTGTCGTTTTAAAGGATATTCCTCCATCTTGCATTTGGAACTATGATGAAACTAACCTGAGTGATGATCCAGGAAATAAAAAAGTCCTGTGCAAGCGAGGCagtaaatatgttgaaaatatttgtaactttAGTAAGAGCTCTACTTCTTTAATGTTCTGTGGGAATGCCGAAGGCAGATGTCTTGCGCCATATGTTGTCTATAAGGCTGATCATTTATGGACGACTTGGACAGAAAATGGTCCACAAAATGCTCGTTATAACCGCTCTAAAAACGTCACAGAAAGCCTTGCCTCTTCGTCTAAATCTCACCCTCCGTTGAACAGAAAAAGGCTCCCATCTGATTCCTCCACTGAAGTGCTCAGTGAAAATGATCTTGATATAGAGTCTGACCAAGAAAGTGAAACGTTTTCTGACTTAGAAGAAATTTCGGATGCTGCACCTGTCATATTACCAAAATTAAAACCTGAGGATTATGCTGTCGAGGATTTTGTTCTCATTTTATTCAATGGTGGAAAGTATCCTGGAAAGATTGTCAGCATCTCAGAGGAAGGCCCTACAGTTGATTGCATGGAAAGAGGACTTAAGTTTTGGAGATGGCCTGAGAGAAAGGACTCCATGGAATATGAATGGGAAGATATTCATTGCAAAATTGATCCTCCAAAAATGGTTTCGAAGCGAAATCAGTTTGCAGTTCCAGCTCTTGATAGTTTCGTTTAG
- Protein Sequence
- MPRKPKKLLGTRAYRNYTPNTLQECLVKVRSGQLTQRVAAERYNISRSTIKSKLKGLHDKPVGRSRVFSPEEELAFVQHLIKLSDYGFPVVESDFRMIVKNYLDKKGGKVSVFSGNYPGYEWTKGFLKRHPDLSVRTSANIKKVRANVGEAELNDYMDNLSVVLKDIPPSCIWNYDETNLSDDPGNKKVLCKRGSKYVENICNFSKSSTSLMFCGNAEGRCLAPYVVYKADHLWTTWTENGPQNARYNRSKNVTESLASSSKSHPPLNRKRLPSDSSTEVLSENDLDIESDQESETFSDLEEISDAAPVILPKLKPEDYAVEDFVLILFNGGKYPGKIVSISEEGPTVDCMERGLKFWRWPERKDSMEYEWEDIHCKIDPPKMVSKRNQFAVPALDSFV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447485;
- 90% Identity
- iTF_01446507;
- 80% Identity
- -